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Phan. H. T. T. Shankar. M., Jones. D. A. B., Furuki. E., Rybak. K., Kamphuis. F., Golzar. H., and Oliver. R. P. (2026) "Adaptation of the Australian Parastagonospora nodorum population to alterations in the host" Physiological and Molecular Plant Pathology DOI: 10.1016/j.pmpp.2026.103510

Vidanalage. A. A. P., Gagalova K. K., Furuki E., Kamphuis. F., Rybak. K., Periyannan S., Gibberd M. R., and Phan. H. T. T. (2026) "Transcriptomic analysis reveals SnTox8-mediated reprogramming of wheat defence signalling" bioRxiv DOI: 10.64898/2026.07.02.736222

Morikawa S., Verdonk. C. J., Lenzo. L. V., Phan. H. T. T., Furuki. E., Gagalova. K. K., Debler. J. W., Turo. C. J., Mousley. C. J., John. E. J., Henares. B. M., and Tan. K. C. (2026) "Major effector loss reveals compensatory pathogenicity networks in a necrotrophic wheat pathogen" bioRxiv DOI: 10.64898/2026.09.14.751338

Dinh. H., Muria-Gonzalez. J. M., Lawrence. J. A., D'Souza. N. K., Morikawa. S., Palmiero. E., and Ellwood. S. R. (2026) "Variable resistance to spot form net blotch disease at a barley chromosome 7 H locus" Sci Rep DOI: 10.1038/s41598-026-70764-3

Punithan. V. G., Sparks. A. H., Gibberd. M. R., Campbell. J., Singh. A., and Muria-Gonzalez. J. (2026) "Host resistance modulates in planta efficacy of seed-applied fluxapyroxad against spot form net blotch in barley" Pest Manag Sci DOI: 10.1002/ps.71228

Morikawa S., Lenzo. L., Thanthrige. K. C., Chang. S., Tan. K. C., and Verdonk. C. (2026) "The bZIP transcription factor PnAda1 functions as a regulator of virulence, fungicide tolerance and necrotrophy in the wheat pathogen Parastagonospora nodorum" bioRxiv DOI: 10.64898/2026.08.18.745654

Olita. T., Sharma. A., Zhanglong. C., Sheikh. A. T., See. P. T., Phan. H. T. T. Zerihun. A., and Gibberd. M. R. (2026) "Asymmetric Economic Impacts of Crop Genetic Resistance Gain and Loss: Evidence from Wheat Tan Spot Pathosystem" Phytopathology DOI: 10.1094/PHYTO-03-26-0067-R

Morikawa, S., Herbst, C., John, E., Croll, D., Mousley, C., Henares, B., Tan, K. C. and Verdonk, C. J. (2026) "A conserved fungal transcription factor domain drives protein-protein interactions and necrotrophic effector-mediated virulence in Parastagonospora nodorum" Molecular Plant-Microbe Interactions DOI: https://doi.org/10.64898/2025.12.09.693112

Lenzo, L., John, E., Bradley, J., Thomas, G., Bennett, D. & Tan, K. C. (2026) "Fair-weather friends. Sequential co-infection demonstrates priority effects in the outcome of Parastagonospora nodorum and Pyrenophora tritici-repentis polymicrobial foliar disease of wheat" Plant Disease DOI: https://doi.org/10.1094/PDIS-11-25-2324- RE

Preston. S., Jones J., Huggett. M. J., Adam. A. A. S., White. N. E., Tan. K. C., and Richards. Z. (2026) "Comparing Microbial Communities of Diseased and Healthy Isopora palifera Corals and Adjacent Waters at the Cocos (Keeling) Islands" Environ Microbiol. DOI: 10.1111/1462-2920.70324

Lopez-Ruiz. F. J. (2026) "Fungicide resistance trends in Australia and New Zealand" Burleigh Dodds Science Publishing DOI: 10.19103/AS.2025.0163.31

Karkee A., Barmukh R., Akinlade O., Kotte B., Norton S.L., Hobson K., Li C., Kamphuis L. G., Sadras V. O., and Varshney R. K. (2026) "Advances, challenges, and opportunities to improve drought tolerance in chickpea" Plant Stress DOI: https://doi.org/10.1016/j.stress.2026.101406

Kedhr T., Gao L.L., Kamphuis L.G., Bose U., Nye-Wood M.G., Juhsaz A. and Colgrave M.L. (2026) "Proteomics and Alkaloid Signature of Narrow Leaf Lupin Leaves Reveal Key Enzymes in Quinolizidine Alkaloid Biosynthesis and Transportation" Journal of Agricultural and Food Chemistry DOI: https://doi.org/10.1021/acs.jafc.6c01210.s002

Singh. A., Zerihun. A., Mylne. J. S., Chen. K., Gibberd. M. R., Campbell. J., & Muria-Gonzalez. J. M. (2026) "Foliar Distribution of Seed-Applied Fluxapyroxad in Barley" Journal of Agricultural and Food Chemistry DOI: https://pubs.acs.org/doi/10.1021/acs.jafc.5c11976

Hossain. M., Gray. N., Misiun. P., Gagalova. K. K., Furuki. E., Clarke. K., Lenzo. L., Golzar. H., Shankar. M., Phan. H. P., & Hane. J. (2026) "EffectorFisher: association of disease phenotype with pangenomic protein-isoform profiles for improved prediction of fungal pathogenicity effectors" Scientific Reports DOI: https://doi.org/10.1038/s41598-026-43646-x

Michael P. J., Bennett S. J., Crockett R., Lamichhane A. and Derbyshire M.C. (2026) "Evaluation of Organic Carriers for Field Inoculation of Brassica napus With Sclerotinia sclerotiorum" Plant Disease DOI: https://doi.org/10.1094/PDIS-03-25-0617-RE

Debler J.W., Lee R.C., Farfan-Caceres .LM., Singh K.B., Kamphuis L.G., & Henares B.M. (2026) "Comparative genome analysis identifies necrosis-inducing effectors in the lentil pathogen Ascochyta lentis in isolates with distinct virulence profiles" BMC Genomics DOI: https://doi.org/10.1186/s12864-026-12790-z

Li. T., Darwish. N., and Lopez-Ruiz. F. J. (2026) "Biomolecule Detection Methods Based on Nanoparticle Approaches" ACS Omega DOI: 10.1021/acsomega.6c00231

Knight, N.L.; Adhikari, K.C.; Mair, W.J.; Dodhia, K.; Zulak, K.G.; Lopez-Ruiz, F.J. (2026) "Monitoring fungicide resistance frequencies – a case study of barley net blotch" Pest Management Science DOI: https://doi.org/10.1002/ps.70690

Dahanayaka B.A., Wilson R., Baloft S., Hane J., and Martin A. (2026) "QTL mapping and proteomic profiling of barley: insights into resistance and susceptibility to Pyrenophora teres f. teres" BMC Plant Biology DOI: https://doi.org/10.64898/2026.02.04.703889

Fisher. M., Moslemi. A., Cupitt. C., Furuki. E., Grime. C. R., Tahghighi. H., Clark. B. L., Debler. J. W., Lawrence. J. A., Gibberd. M. R., Easton. J., & Kamphuis. L. (2026) "Alternaria and Stemphylium species found on safflower plants and seed in Western Australia" Plant Disease DOI: https://doi.org/10.1094/PDIS-07-25-1372-SR

Tony, A., Mullan, D., Phan, H. Lopez-Ruiz, F. J., Dodhia, K. N., Saunders, B. J., Fang, C., Ellwood, S. & Tan, K. C. (2025) "Evidence of a distinct Blumeria graminis f. sp. tritici pathotype structure in Australian wheat powdery mildew: implications for resistance breeding" Plant Pathology DOI: https://doi.org/10.64898/2025.12.11.693847

Zulak K. G., Chang S., Tan K. C., Turo C., Oliver R. P., & Lopez-Ruiz F. J. (2025) "Dissecting allele-specific fungicide resistance mechanisms by heterologous expression of the demethylase inhibitor target gene Cyp51 in a phytopathogen model" Pest Management Science DOI: https://doi.org/10.1101/2025.10.16.682737

Davis J. M., Gagalova K. K., Sanglard L. M. V. P., Cuellar S., Gibberd M. R., & Naim F. (2025) "Benchmarking methods for genome annotation using Nanopore direct RNA in a non-model crop plant" Bioinformatics Advances DOI: 10.1101/2025.07.14.664836

Lapalu N., Lamothe L., Petit Y., Genissel A., Delude C., Feurtey A., Abraham L. N., Smith D., King R., Renwick A., Appertet M., Sucher J., Steindorff A. S., Goodwin S. B., Kema G. H. J., Grigoriev I. V. Hane J., Rudd J., Stukenbrock E., Croll D., Scalliet G., & Lebrun MH. (2025) "Improved gene annotation of the fungal wheat pathogen Zymoseptoria tritici based on combined Iso-Seq and RNA-Seq evidence" Molecular Plant Microbe Interactions DOI: 10.1094/MPMI-07-25-0077-TA

Haywood. J., Breese. K. J., McDougal D. P., Verdonk. C., Partridge. A., Lo. A. F., Zhang. Z., Yang. W. C., Bruning. J. B., Saliba. K. J., Bond. C. S., Stubbs. K. A., & Mylne. J. S. (2025) "Structural insights into a plant-conserved DHFR-TS reveal a selective herbicide target" Molecular Plant DOI: 10.1016/j.molp.2025.06.016

Verdonk. C., Gagalova. K., Raffaele. S., & Derbyshire. M (2025) "Learning the language of plant immunity: opportunities and challenges for AI-assisted modelling of fungal effector x host protein complexes" Computational and Structural Biotechnology Journal DOI: 10.1016/j.csbj.2025.06.048

Johansson. A., Karisto. P., Latvala. S., See. P. T., Lillemo. M., Hansen. P. B., & Jalli. M. (2025) "ToxA and ToxB have minimal effect on tan spot epidemics of spring wheat in the Nordics" European Journal of Plant Pathology DOI: 10.21203/rs.3.rs-6547012/v1

Thackwray E.M., Henares B.M., Grime C.R., Clark B.L., Lee R.C., and Kamphuis L.G. (2025) "Genetic mapping of Ascochyta blight resistance in an ILL6002 × Indianhead lentil mapping population" The Plant Genome DOI: 10.22541/essoar.174526326.61647910/v1

Guo J., Shi G., Islam M., Kariyawasam G., Moolhuijzen P., See P. T., Zhong S., Aboukhaddour R., Faris J. D., and Friesen T. (2025) "Identification of a novel genetic locus conferring virulence in the wheat tan spot pathogen Pyrenophora tritici-repentis" Fungal Genet Biol DOI: http://doi.org/10.1016/j.fgb.2025.104002

Debler J.W., Lee R.C., Singh K.B., Kamphuis .LG., & Henares B.M. (2025) "Boscalid – a new selectable marker for Ascochyta lentis and Ascochyta rabiei" Fungal Biology DOI: 10.1016/j.funbio.2025.101615

Derbyshire M. C., Newman T. E., Khentry Y., Michael P. J., Bennett S. J., Lamichhane A. R., Graham-Taylor C., Chander S., Camplone C., Vicini S., Esquivel-Garcia L., Coutu C., Hegedus D., Clarkson J., Lindbeck K & Kamphuis L. G (2025) " Recombination and transposition drive genomic structural variation potentially impacting life history traits in a host-generalist fungal plant pathogen" BMC Biology DOI: https://doi.org/10.1186/s12915-025-02179-x

Olita, T., Sung, B., Sharma, A., Cao, Z., Mapulanga-Hulston, J., Gibberd, M (2025) "Fungicide Resistance Management in West Australia’s Wheatbelt" Scientific Data DOI: https://doi.org/10.1038/s41597-025-04840-0

D'Souza N., Dinh X. H., Lawrence J., Palmiero E., Muria-Gonzalez J. M., Gupta S., Forrest K., & Ellwood S. (2025) "Exploiting barley landraces to re-introduce lost genetic diversity: resistance to net form net blotch" Authorea DOI: https://doi.org/10.22541/au.174111195.52152721/v1

Haywood J., Breese K. J., Muria-Gonzalez J. M., Bernath-Levin K., Waters M., Stubbs K. A., & Mylne J. S. (2025) "A Non‐Volatile Pro‐Dicamba Herbicide Inspired by Meclofenoxate" Chemistry – A European Journal DOI: https://doi.org/10.1002/chem.202404282

Li, T., Datson Z., Hena S., Chang S., Werry S., Zhao L., Amiralian N., Bhatelia T., Lopez-Ruiz F. J., MacGregor M., Iyer K. S., Ciampi S., Shiddiky M. J. A., & Darwish N. (2025) "Sonochemical Functionalization of Glass" Advanced Functional Materials DOI: https://doi.org/10.1002/adfm.202420485

Verdonk C., Agostino M., Eto K. Y., Hall D., Bong C., & Ramsay J. (2025) "Structural Basis for Control of Integrative and Conjugative Element Excision and Transfer by the Oligomeric Winged-Helix-Turn-Helix Protein RdfS" Nucleic Acids Research DOI: https://doi.org/10.1093/nar/gkaf249

Khedr T., Gao L.L., Kamphuis L.G., Juhász A., & Colgrave M.L. (2025) ""Intra- and inter-plant variability of quinolizidine alkaloids in narrow-leaf lupin seeds, grown under different day/night cycles."" Heliyon DOI: https://doi.org/10.1016/j.heliyon.2025.e42367

McKirdy. H. L., Mckirdy. S. J., Emery. R. N., Liu. T., Lee. BH., Km. J., Kachigunda. B., Kim. B., Li. L., & Ren. Y. (2025) "Ethyl formate diluted with nitrogen is an effective biosecurity treatment for brown marmorated stink bug (Halyomorpha halys)" Pest Management Science DOI: 10.1002/ps.70450

Hodgson, L. M., Lopez-Ruiz, F. J., Gibberd, M. R., Thomas, G. J., & Zerihun, A. (2025). "Field-scale gene flow of fungicide resistance in Pyrenophora teres f. teres and the effect of selection pressure on the population structure" Phytopathology. DOI: https://doi.org/10.1094/phyto-10-23-0378-kc

Jones, D. A. B., Rybak, K., Hossain, M., Bertazzoni, S., Williams, A., Tan, K.-C., Phan, H. T. T., & Hane, J. K. (2024). "Repeat-induced point mutations driving Parastagonospora nodorum genomic diversity are balanced by selection against non-synonymous mutations" Communications Biology. DOI: https://doi.org/10.1038/s42003-024-07327-7

Khedr, T., Gao, L.-L., Kamphuis, L. G., Bose, U., Juhász, A., & Colgrave, M. L. (2024). "Evaluation of alkaloid levels in commercial and wild genotypes of narrow-leafed lupin" Journal of Food Composition and Analysis. DOI: https://doi.org/10.1016/j.jfca.2024.106600

Cao, Z., Brown, J., Gibberd, M., Easton, J., & Rakshit, S. (2024). "Optimal design for on-farm strip trials—systematic or randomised?" Field Crops Research. DOI: https://doi.org/10.1016/j.fcr.2024.109594

Thackwray, E. L., Materne, M. A., Shunmugam, A. S. K., Henares, B. M., Lee, R. C., & Kamphuis, L. G. (2024). "The History and Pedigree of Australian Lentil Cultivars" Legume Science. DOI: https://doi.org/10.1002/leg3.70006

John, E., Verdonk, C., Singh, K. B., Oliver, R. P., Lenzo, L., Morikawa, S., Soyer, J. L., Muria-Gonzalez, J., Soo, D., Mousley, C., Jacques, S., & Tan, K.-C. (2024). "Regulatory insight for a Zn2Cys6 transcription factor controlling effector-mediated virulence in a fungal pathogen of wheat" PLoS Pathogens. DOI: https://doi.org/10.1371/journal.ppat.1012536

Zambounis, A., Maniatis, E. I., Mincuzzi, A., Gray, N., Hossain, M., Tsitsigiannis, D. I., Paplomatas, E., Ippolito, A., Schena, L., & Hane, J. K. (2024). "Highly Repetitive Genome of Coniella granati (syn. Pilidiella granati), the Causal Agent of Pomegranate Fruit Rot, Encodes a Minimalistic Proteome with a Streamlined Arsenal of Effector Proteins" International Journal of Molecular Sciences. DOI: https://doi.org/10.3390/ijms25189997

Rawlinson, C., Nealon, G., Chooi, Y. H., Oliver, R. P., Moffat, C. S., & See, P. T. (2024). "Discovery of Two Novel Phthalide Phytotoxins from the Wheat Tan Spot Fungal Pathogen Pyrenophora tritici-repentis" Journal of Agricultural and Food Chemistry DOI: https://doi.org/10.1021/acs.jafc.4c02533

Morikawa, S., Verdonk, C., John, E., Lenzo, L., Sbaraini, N., Turo, C., Li, H., Jiang, D., Chooi, Y.-H., & Tan, K.-C. (2024). "The Velvet transcription factor PnVeA regulates necrotrophic effectors and secondary metabolism in the wheat pathogen Parastagonospora nodorum" BMC Microbiology. DOI: https://doi.org/10.1186/s12866-024-03454-7

Olita, T., Cao, Z., & Gibberd, M. (2024). "Economic analysis of crop protection strategies: comparing the value of increased fungicide inputs and crop genetic improvement in managing Ascochyta blight in Australian chickpeas" Pest Management Science. DOI: https://doi.org/10.1002/ps.8319

See, P. T., Iagallo, E. M., Marathamuthu, K. A., Wood, B., Aboukhaddour, R., & Moffat, C. S. (2024). "A New ToxA Haplotype in the Wheat Fungal Pathogen Bipolaris sorokiniana" Phytopathology. DOI: https://doi.org/10.1094/PHYTO-10-23-0370-R

Bennett, S. J., Rijal Lamichhane, A., & Michael, P. J. (2024). "Thermal time and time of sowing impacts disease development of Brassica napus inoculated with diverse Sclerotinia sclerotiorum isolates" Journal of Plant Pathology. DOI: https://doi.org/10.1007/s42161-024-01680-6

Andronis, C. E., Jacques, S., Lopez-Ruiz, F. J., Lipscombe, R., & Tan, K.-C. (2024) "Proteomic analysis revealed that the oomyceticide phosphite exhibits multi-modal action in an oomycete pathosystem." Journal of Proteomics, 301, 105181. DOI: https://doi.org/10.1016/j.jprot.2024.105181

Zambounis, A., Boutsika, A., Gray, N., Hossain, M., Chatzidimopoulos, M., Tsitsigiannis, D. I., Paplomatas, E., & Hane, J. (2024). "Pan-genome survey of Septoria pistaciarum, causal agent of Septoria leaf spot of pistachios, across three Aegean sub-regions of Greece" Frontiers in Microbiology. DOI: https://doi.org/10.3389/fmicb.2024.1396760

Han, V. C., Michael, P. J., Crockett, R., Swift, B., & Bennett, S. J. (2024) "A new and effective non-contact soil application method for basal infection by Sclerotinia sclerotiorum. " Technology of the Month (June 2024). DOI: https://www.appsnet.org/Publications/totm/pdf/jun24.pdf

See, P. T., Oliver, R. P., & Moffat, C. S. (2024). "The wheat tan spot pathosystem in Australia: A showcase of effector-assisted breeding" Plant Pathology. DOI: https://doi.org/10.1111/ppa.13944

Yan Y., Gagalova K.K., Gerbrandt E.M. & Castellarin S.D. (2024) "Cuticular wax biosynthesis in blueberries (Vaccinium corymbosum L.): Transcript and metabolite changes during ripening and storage affect key fruit quality traits" Horticulture Research DOI: https://doi.org/10.1093/hr/uhae004

Lo T., Coombe L., Gagalova K.K., Marr A., Warren R.L., Kirk H., Pandoh P., Zhao Y., Moore RA. & Mungall AJ (2024) "Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response" G3: Genes, Genomes, Genetics DOI: https://doi.org/10.1093/g3journal/jkad247

Derbyshire, M. C., Newman, T. E., Thomas, W. J. W., Batley, J., & Edwards, D. (2024) "The complex relationship between disease resistance and yield in crops. " Plant Biotechnology Journal. DOI: https://doi.org/10.1111/pbi.14373

Gong X., Haywood J. & Yang W.C. (2024) "Chemical genetics approaches for pesticide target mining" Trends in Plant Science DOI: https://doi.org/10.1016/j.tplants.2024.06.004

Duong, C., Sung, B., Lee, S., & Easton, J. (2024) "The effect of shopping channel (online vs. offline) on message framing of naturalness." Journal of Consumer Behaviour DOI: https://doi.org/10.1002/cb.2259

Hassett, K., Muria-Gonzalez, M. J., Martin, A., Karakaya, A., Çelik Oğuz, A., Bakonyi, J., Knight, N. L., Prins, R., & Ellwood, S. R. (2024) "Global spread, genetic differentiation and selection of barley spot form of net blotch isolates" Phytopathology. DOI: https://doi.org/10.1094/PHYTO-11-23-0442-R

Tran V. C., Nguyen T. H., Hoang T. L. A., Pham T. T. M., Nguyen T. M., Tran T. D., Nguyen T. H. G., Han V. C., Tran A. T., & La V. H. (2024) "Harnessing synthetic microbial communities with nitrogen-fixing activity to promote rice growth" Open Agriculture DOI: https://doi.org/10.1515/opag-2022-0392

Otoo, J., Musah, R., Olita, T., Ireland, K. B., & Zerihun, A. (2024). "Knowledge and perception of cereal farmers and extension agents on fungicide use in northern Ghana" Pest Management Science. DOI: https://doi.org/10.1002/ps.8124

Paredes J. A., Sparks A. H., Monguillot J. H., Rago A. M., & Molina J. P. E. (2024) "Aerial spread of smut spores during peanut harvest" Tropical Plant Pathology DOI: https://doi.org/10.1007/S40858-024-00645-5

Blain G. C., de Rocha Sobierajski G., de Matos Pires R. C., de Carvalho Silveira J. M., Martins L. L., & Sparks A. H. (2024) "An R-package to track soil water deficits in the root zone: when and how much to irrigate" Bragantia DOI: https://doi.org/10.1590/1678-4499.20240138

Sparks A. H., Adorada D. L., Colombi E., Kelly L. A., Young A., Knight N. L., & Vaghefi N. (2024) "Clonal expansion from standing genetic variation underpins the evolution of an emerging plant pathogen in Australia" BioRXiv DOI: https://doi.org/10.1101/2024.12.26.630446

Pires R., Hepworth A., O'Leary R., Carroll J., Goldie J., Marchiori D., Melloy P., Padgam M., Parsonage H., & Sparks A. H. (2024) "weatherOz: An API Client for Australian Weather and Climate Data Resources in R" Journal of Open Source Software DOI: https://doi.org/ 10.21105/joss.06717

Yang F., Sanglard L. V. P., Lee C. P., Ströher E., Singh S., Oh G. G. K., Millar A. H., Small I., des Francs-Small C. C. (2024) "Mitochondrial atp1 mRNA knockdown by a custom-designed pentatricopeptide repeat protein alters ATP synthase" Plant Physiology DOI: https://doi.org/10.1093/plphys/kiae008

Gagalova K. K., Yan Y., Wang S., Matzat T., Castellarin S. D., Birol I., Edwards D., & Schuetz M. (2024) "Leaf pigmentation in Cannabis sativa: Characterization of anthocyanin biosynthesis in colorful Cannabis varieties" Plant Direct DOI: https://doi.org/10.1002/pld3.70016

Andronis C. E., Bringans S., & Tan K. C. (2024) "Application of Proteomic Methods in Oomycete Biology" Methods in Molecular Biology DOI: https://doi.org/10.1007/978-1-0716-4330-3_15

Luna L. C., Awange J., Song Y., Bui L. K., Zerihun A., & Kuhn M. (2024) "Surface water and geomorphological changes of the Blue Nile dynamics associated with the Grand Ethiopian Renaissance Dam (GERD): a multi-temporal analysis" GIScience & Remote Sensing DOI: https://doi.org/10.1080/15481603.2024.2346383

Salvacion A., Lutero D., Abacay E., Nazareno A., & Pangga I. (2024) "Mapping Flood Hazard in Marinduque, Philippines, Using Maximum Entropy Approach" Advances in Geographic Information Science DOI: https://doi.org/10.1007/978-3-031-53763-9_10

Fernandes, K., Bateman, P. W., Saunders, B. J., Gibberd, M., Bunce, M., Bohmann, K., & Nevill, P. (2024). "Analysing the effects of distance, taxon and biomass on vertebrate detections using bulk-collected carrion fly iDNA" Royal Society Open Science. DOI: https://doi.org/10.1098/rsos.231286

Rozano, L., Jones, D. A. B., Hane, J. K., & Mancera, R. L. (2024). "Template-Based Modelling of the Structure of Fungal Effector Proteins" Molecular Biotechnology. DOI: https://doi.org/10.1007/s12033-023-00703-4

Han, V. C., Michael, P. J., Crockett, R., Swift, B., & Bennett, S. J. (2024) "Effective, consistent, and rapid non-contact application methods for seedling basal stem infection by Sclerotinia sclerotiorum." Plant Disease, (in press). DOI: https://doi.org/10.1094/PDIS-11-23-2412-SC

Hafez, M., Gourlie, R., McDonald, M., Telfer, M., Carmona, M. A., Sautua, F. J., Moffat, C. S., Moolhuijzen, P. M., See, P. T., & Aboukhaddour, R. (2024). "Evolution of the ToxB Gene in Pyrenophora tritici-repentis and Related Species" Molecular Plant-Microbe Interactions. DOI: https://doi.org/10.1094/MPMI-08-23-0114-FI

Olita, T., Stankovic, M., Sung, B., Jones, M., & Gibberd, M. (2024) "Growers’ perceptions and attitudes towards fungicide resistance extension services." Scientific Reports, 14, 6821. DOI: https://doi.org/10.1038/s41598-024-57530-z

Zulak, K. G., Farfan-Caceres, L., Knight, N. L., & Lopez-Ruiz, F. J. (2024) "Exploiting long read sequencing to detect azole fungicide resistance mutations in Pyrenophora teres using unique molecular identifiers." Scientific Reports, 14, 6285. DOI: https://doi.org/10.1038/s41598-024-56801-z

Helps, J., Lopez-Ruiz, F., Zerihun, A., & van den Bosch, F. (2024). "Do growers using solo fungicides affect the durability of disease control of growers using mixtures and alternations? The case of spot-form net blotch in Western Australia." Phytopathology, 114(3), 590-602. DOI: https://doi.org/10.1094/PHYTO-02-23-0050-R

Oliver, R., Hane, J., Mair, W., & Lopez-Ruiz, F. (2024). "The 2023 update of target site mutations associated with resistance to fungicides and a web-tool to assist label designations." Journal of Plant Diseases and Protection, 131, 1265-1270. DOI: https://doi.org/10.1007/s41348-024-00872-7

Han, V. C., Tran., Q. V., Ha, C. V. (2024) "Phytophthora mekongensis (Cacciola & Hoa, 2018). " Pathogen of the Month (March 2024). DOI: https://www.appsnet.org/Publications/potm/pdf/Mar24.pdf

Štorchová, H., Krüger, M., Small, I., Adamec, L., Nevill, P. G., Howell, K. A., Dixon, K. W., Derbyshire, M., Zhong, X., & Cross, A. T. (2024). "Global mitochondrial and chloroplast genome diversity in the threatened aquatic carnivorous plant Aldrovanda vesiculosa" Aquatic Botany DOI: https://doi.org/10.1016/j.aquabot.2023.103742

George, N. A., Cuamba, H. J. P., Lundy, M. E., & Bennett, S. J. (2024). "Evaluating the Agricultural Production Systems sIMulator (APSIM) wheat module for California" Crop & Pasture Science. DOI: https://doi.org/10.1071/CP23046

Ellwood, S. R., Lopez-Ruiz, F. J., & Tan, K.-C. (2024) "Barley powdery mildew control in Western Australia and beyond." Plant Pathology. DOI: https://doi.org/10.1111/ppa.13884

Hodgson, L. M., Rakshit, S., Lopez-Ruiz, F. J., Gibberd, M. R., Thomas, G. J., & Zerihun, A. (2024). "Spatial dependency in stubble-borne Pyrenophora teres f. teres and influence of sample support size on DNA concentration and fungicide resistance frequency." Phytopathology, 114(1), 269-281. DOI: https://doi.org/10.1094/PHYTO-02-23-0062-R

Ranawaka, B., An, J., Lorenc, M. T., Jung, H., Sulli, M., Aprea, G., Roden, S., Llaca, V., Hayashi, S., Asadyar, L., LeBlanc, Z., Ahmed, Z., Naim, F., Bolzan de Campos, S., Cooper, T., de Felippes, F. F., Dong, P., Zhong, S., Garcia-Carpintero, V., ... Waterhouse, P. M. (2024). "Author Correction: A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology" Nature Plants. DOI: https://doi.org/10.1038/s41477-024-01618-x

Han, V. C., Tran., Q. V., Ha, C. V. (2023) "Phytophthora parvispora (Kröber & Rainer, 1993; Scanu & Denman, 2014). " Pathogen of the Month (December 2023). DOI: https://doi.org/10.13140/RG.2.2.25056.08965

Derbyshire M. C. and Raffaele S. (2023) "Till death do us pair: Co-evolution of plant–necrotroph interactions" Current Opinion in Plant Biology. DOI: https://doi.org/10.1016/j.pbi.2023.102457

Newman T. E., Jacques S., Grime C., Mobegi F. M., Kamphuis F. L., Khentry Y., Lee R. C. and Kamphuis L. G. (2023) "Genetic dissection of domestication traits in interspecific chickpea populations" The Plant Genome. DOI: https://doi.org/10.1002/tpg2.20408

Regmi, R., Newman, T.E., Khentry, Y., Kamphuis, L.G., Derbyshire, M.C. (2023). "Genome-wide identification of Sclerotinia sclerotiorum small RNAs and their endogenous targets" BMC Genomics. DOI: https://doi.org/10.1186/s12864-023-09686-7

La, V. H., Tran, D. H., Han, V. C., Nguyen, T. D., Duong, V. C., Nguyen, V. H., Tran, A.T., Nguyen, T.H.G., & Ngo, X. B. (2023) "Drought stress‐responsive abscisic acid and salicylic acid crosstalk with the phenylpropanoid pathway in soybean seeds." Physiologia Plantarum, 175(5), e14050. DOI: https://doi.org/10.1111/ppl.14050

Rozano, L., Hane, J.K., Mancera, R.L (2023). "The Molecular Docking of MAX Fungal Effectors with Plant HMA Domain-Binding Proteins." International Journal of Molecular Sciences. DOI: https://doi.org/10.3390/ijms242015239

Han, V.C, Michael, P.J., Swift, B., Bennett, S.J. (2023) "Biological control of Sclerotinia sclerotiorum: Modes of action of biocontrol agents, soil organic amendments, and soil microbiome manipulation" Biological Control. DOI: https://doi.org/10.1016/j.biocontrol.2023.105346

Talapov T, Gunes N, Bagriyanik Z, Demirel O, Dedecan O, Uygun AE, Akvec O, Kahraman A, Kamphuis LG and Can C. (2023) "First report of Ascochyta rabiei infections on endemic Turkish populations of Cicer bijugum and C. turcicum" Plant Disease. DOI: https://doi.org/10.1094/PDIS-02-23-0393-PDN

Derbyshire, M.C., Raffaele, S., (2023). "Surface frustration re-patterning underlies the structural landscape and evolvability of fungal orphan candidate effectors" Nature Communications. DOI: https://doi.org/10.1038/s41467-023-40949-9

Ranawaka, B., An, J., Lorenc, M.T., Jung, H., Sulli, M., Aprea, G., Roden, S., Llaca, V., Hayashi, S., Asadyar, L., LeBlanc, Z., Ahmed, Z., Naim, F., Bolzan de Campos, S., Cooper, T., de Felippes, F.F., Dong, P., Zhong, S., Garcia-Carpintero, V., Orzaez, D., Dudley, K.J., Bombarely, A., Bally, J., Winefield, C., Giuliano, G., Waterhouse, P.M. (2023) "A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology." Nature Plants. DOI: https://doi.org/10.1038/s41477-023-01489-8

Jones D, Fornarelli R, Derbyshire M, Gibberd M, Barker K, Hane J. (2023). "The pursuit of genetic gain in agricultural crops through the application of machine-learning to genomic prediction" Front. Genet. DOI: https://doi.org/10.3389/fgene.2023.1186782

Muria-Gonzalez, M.J., Lawrence, J.A., Palmiero, E., D'Souza, N.K., Gupta, S., Ellwood, S.R. (2023) "Major Susceptibility Gene Epistasis over Minor Gene Resistance to Spot Form Net Blotch in a Commercial Barley Cultivar." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-10-22-0376-R

Tran, Q.V., Ha, C.V., Vvedensky, V.V., Han, V.C. (2023) "Current status and characterization of Phytophthora species associated with gummosis of citrus in Northern Vietnam" Journal of Phytopathology. DOI: https://doi.org/10.1111/jph.13204

Michael P. J., Rijal Lamichhane A., Bennett S. J. (2023) "Temperature and Isolate Are Important Determinants of Brassica napus Susceptibility to Aggressive Sclerotinia sclerotiorum Isolates" Agronomy. DOI: https://doi.org/10.3390/agronomy13061606

Stefanova, K.T., Brown, J., Grose, A., Cao, Z., Chen, K., Gibberd, M. and Rakshit, S., (2023). "Statistical analysis of comparative experiments based on large strip on-farm trials. " Field Crops Research. DOI: https://doi.org/10.1016/j.fcr.2023.108945

Moolhuijzen, P., Ge, C., Palmiero, E., Ellwood, S.R. (2023) "A unique resistance mechanism is associated with RBgh2 barley powdery mildew adult plant resistance." Theoretical and Applied Genetics. DOI: https://doi.org/10.1007/s00122-023-04392-0

Moolhuijzen, P., Sanglard, L. M. V. P., Paterson, D. J., Gray, S., Khambatta, K., Hackett, M. J., Zerihun, A., Gibberd, M. R., & Naim, F. (2023). "Spatiotemporal patterns of wheat response to Pyrenophora tritici-repentis in asymptomatic regions revealed by transcriptomic and X-ray fluorescence microscopy analyses" Journal of Experimental Botany. DOI: https://doi.org/10.1093/jxb/erad183

Derbyshire, M. C., Marsh, J., Tirnaz, S., Nguyen, H. T., Batley, J., Bayer, P. E., & Edwards, D. (2023). "Diversity of fatty acid biosynthesis genes across the soybean pangenome." The Plant Genome DOI: https://doi.org/10.1002/tpg2.20334

See, P. T., & Moffat, C. S. (2023). "Profiling the Pyrenophora tritici-repentis secretome: The Pf2 transcription factor regulates the secretion of the effector proteins ToxA and ToxB" Molecular Microbiology. DOI: https://doi.org/10.1111/mmi.15058

Olita, H. T., Sung, B., Hooper, B., Cao, Z., Lopez-Ruiz, F., & Gibberd, M. (2023) "The socio-economic impact of fungicide resistance in West Australia's Wheatbelt." Advances in Agronomy. DOI: https://doi.org/10.1016/bs.agron.2023.03.005

Newman, T. E., Kim, H., Khentry Y., Sohn, K. H., Derbyshire M. and Kamphuis L. G. (2023) "The broad host range pathogen Sclerotinia sclerotiorum produces multiple effector proteins that induce host cell death intracellularly." Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.13333

de Kock W., Mackie M., Ramsøe M., Allentoft M.E., Broderick A.C., Haywood J.C., Godley B.J., Snape .RT.E., Bradshaw P.J., Genz H., von Tersch M., Dee M.W., Palsbøll P.J., Alexander M., Taurozzi A.J., Çakirlar C. (2023) "Threatened North African seagrass meadows have supported green turtle populations for millennia" Proceedings of the National Academy of Sciences of the United States of America DOI: https://doi.org/10.1073/pnas.2220747120

Cerón-Bustamante M., Tini F, Beccari G., Benincasa P., & Covarelli L. (2023) "Effect of Different Light Wavelengths on Zymoseptoria tritici Development and Leaf Colonization in Bread Wheat" Journal of Fungi DOI: https://doi.org/10.3390/jof9060670

van den Bosch F., McRoberts N., Bourhis Y., Parnell S., & Hassall K.L. (2023) "The value of volunteer surveillance for the early detection of biological invaders" J Theor Biol DOI: https://doi.org/10.1016/j.jtbi.2022.111385

Valenti I., Tini F., Sevarika M., Agazzi A., Beccari G., Bellezza I., Ederli L., Grottelli S., Pasquali M., Romani R., Saracchi M., Covarelli L. (2023) "Impact of Enniatin and Deoxynivalenol Co-Occurrence on Plant, Microbial, Insect, Animal and Human Systems: Current Knowledge and Future Perspectives" Toxins DOI: https://doi.org/10.3390/toxins15040271

Senatore M.T., Prodi A., Tini F., Balmas .V, Infantino A., Onofri A., Cappelletti E., Oufensou S., Sulyok M., Covarelli L., Beccari G. (2023) "Different diagnostic approaches for the characterization of the fungal community and Fusarium species complex composition of Italian durum wheat grain and correlation with secondary metabolite accumulation" Journal of the Science of Food and Agriculture DOI: https://doi.org/10.1002/jsfa.12526

Salvacion A.R . (2023) "Delineating village-level drought risk in Marinduque Island, Philippines" Natural Hazards DOI: https://doi.org/10.1007/s11069-022-05795-w

Quaglia M., Beccari G., Vella G.F., Filippucci R., Buldini D., Onofri A., Sulyok M., & Covarelli L. (2023) "Marketed Quinoa (Chenopodium quinoa Willd.) Seeds: A Mycotoxin-Free Matrix Contaminated by Mycotoxigenic Fungi" Pathogens DOI: https://doi.org/10.3390/pathogens12030418

Phong W.N., Regmi R., Adhikari K.C., Bhattarai R.R., & Show P. (2023) "Bioactive Compounds from Diatoms" Diatoms Biotechnology DOI: https://doi.org/10.1201/9781003436553-2

Olita H. T., Schilizzi S., & Iftekhar S. (2023) "Mitigating Risky Conservation Tenders: Can an Insurance Mechanism Be a Solution?" Journal of Agricultural and Resource Economics DOI: https://doi.org/10.22004/AG.ECON.320677

Nguyen H.C., Nguyen T.T., Lam T..N, Le T.T., Le P.L., Nguyen T.H., & Dinh X.H. (2023) "Pathogenicity structure of the Xanthomonas oryzae pv. oryzae population causing rice bacterial blight in Vietnam" Archives of Phytopathology and Plant Protection DOI: https://doi.org/10.1080/03235408.2023.2184230

Mair W.J., Wallwork H., Garrard T.A., Haywood J., Sharma N., Dodhia K.N., Oliver R.P., & Lopez-Ruiz F.J. (2023) "Emergence of resistance to succinate dehydrogenase inhibitor fungicides in Pyrenophora teres f. teres and P. teres f. maculata in Australia" bioRxiv DOI: https://doi.org/10.1101/2023.04.23.537974

Macandog D., Salvacion A., Pabico J., Tingson K., Reblora M., Edrial J., Lansigan F., & Zafaralla M. (2023) "Developing a Bayesian Model of Climate-Induced Lake Overturn in Talisay, Taal Lake" Ecosystem and Species Habitat Modeling for Conservation and Restoration" Ecosystem and Species Habitat Modelling for Conservation and Restoration DOI: https://doi.org/10.1007/978-981-99-0131-9_6

Knight N. L., Adhikari K. C., Dodhia K., Mair W. J., Lopez-Ruiz F.J. (2023) "Workflows for detecting fungicide resistance in net form and spot form net blotch pathogens" bioRxiv DOI: https://doi.org/10.1002/ps.7951

Fruzangohar M, Moolhuijzen P, Bakaj N, Taylor J (2023) "CoreDetector: a flexible and efficient program for core-genome alignment of evolutionary diverse genome" Bioinformatics DOI: https://doi.org/10.1093/bioinformatics/btad628

Agaton A. B., del Rosario E. A., Nguyen-Orca M. F., Salvacion A. R., & Sandalo R. M. (2023) "Introduction to the Journal of Human Ecology and Sustainability (JHES)" Journal of Human Ecology and Sustainability DOI: https://doi.org/10.56237/jhes24ED

Lopez-Ruiz F. J. (2023) "Tracking the development of fungicide resistance" Burleigh Dodds Series in Agricultural Science DOI: https://doi.org/10.19103/as.2022.0116.03

Saieed A. U., Zhao Y., Chen K., Rahman S., Zhang J., Islam S., & Ma W. (2023) "Phenotypic Plasticity of Yield and Yield-Related Traits Contributing to the Wheat Yield in a Doubled Haploid Population" Plants DOI: https://doi.org/10.3390/plants13010017

Sanglard L. V. P., Small I. D., & des Francs-Small C. C. (2023) "Alteration of Mitochondrial Transcript Expression in Arabidopsis thaliana Using a Custom-Made Library of Pentatricopeptide Repeat Proteins" International Journal of Molecular Sciences DOI: https://doi.org/10.3390/ijms241713233

Hassett, K., Muria-Gonzalez, M. J., Turner, A., McLean, M. S., Wallwork, H., Martin, A., & Ellwood, S. R. (2023). "Widespread genetic heterogeneity and genotypic grouping associated with fungicide resistance among barley spot form net blotch isolates in Australia." G3 Genes|Genomes|Genetics. DOI: https://doi.org/10.1093/g3journal/jkad076

van den Bosch, F., Zerihun, A., Poole, N., Thomas, G., & Lopez-Ruiz, F. J. (2023). "Adjusting fungicide treatment programmes when resistance is developing: The case of spot-form net-blotch in Western Australia." Plant Pathology. DOI: https://doi.org/10.1111/ppa.13726

Rozano, L., Mukuka, Y. M., Hane, J. K., & Mancera, R. L. (2023). "Ab Initio Modelling of the Structure of ToxA-like and MAX Fungal Effector Proteins." International Journal of Molecular Sciences. DOI: https://doi.org/10.3390/ijms24076262

Rozano, L., Jones, D. A. B., Hane, J. K., & Mancera, R. L. (2023). "Template-Based Modelling of the Structure of Fungal Effector Proteins." Molecular Biotechnology. DOI: https://doi.org/10.1007/s12033-023-00703-4

Henares, B. M., Blake, S. N., Farfan-Caceres, L., Tahghighi, H., Debler, J. W., Russ, M. H., Farquharson, E. A., Rose, J. A., Khani, M., Davidson, J., Kamphuis, L. G., & Lee, R. C. (2023). "Virulence profiles and genome-wide association study for Ascochyta lentis isolates collected from Australian lentil-growing regions." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-10-22-0397-R

Newman, T. E., Khentry Y., Leo A., Lindbeck K., Kamphuis L. G., and Derbyshire M. (2023) "Association mapping combined with whole genome sequencing data reveals candidate causal variants for sclerotinia stem rot resistance in Brassica napus." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-06-22-0217-FI

Taylor, J., Jorgensen, D., Moffat, C. S., Chalmers, K. J., Fox, R., Hollaway, G. J., Cook, M. J., Neate, S. M., See, P. T., & Shankar, M. (2023). "An international wheat diversity panel reveals novel sources of genetic resistance to tan spot in Australia" Theoretical and Applied Genetics. DOI: https://doi.org/10.1007/s00122-023-04332-y

Aboukhaddour, R., Abdel-Fattah, M. H., McDonald, M., Moffat, C., Navathe, S., Friesen, T. L., Strelkov, S. E., Oliver, R. P., Tan, K.-C., Liu, Z., Moolhuijzen, P., Phan, H., See, P. T., & Solomon, P. (2023). "A revised nomenclature for ToxA haplotypes across multiple fungal species" Phytopathology. DOI: https://doi.org/10.1094/PHYTO-01-23-0017-SC

Hodgson, L. M., Cox, B. A., Lopez-Ruiz, F. J., Gibberd, M. R., Thomas, G. J., & Zerihun, A. (2023). "Optimized Sample Processing Pipeline for PCR-Based Fungicide Resistance Quantification of Stubble-Borne Fungal Pathogens." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-07-22-0239-R

Lee, R. C., Grime, C. R., O'Driscoll, K., Khentry, Y., Farfan-Caceres, L. M., Tahghighi, H., & Kamphuis, L. G. (2023). "Field Pea (Pisum sativum) Germplasm Screening for Seedling Ascochyta Blight Resistance and Genome-Wide Association Studies Reveal Loci Associated with Resistance to Peyronellaea pinodes and Ascochyta koolunga." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-02-22-0051-R

See, P. T., Marathamuthu, K., Cupitt, C., Iagallo, E., & Moffat, C. (2023). "A race profile of tan spot in Australia reveals race 2 isolates harbouring ToxC1" Phytopathology. DOI: https://doi.org/10.1094/PHYTO-11-22-0422-R

Tran, Q.V., Ha, C.V., Vvedensky, V.V., Le, T.T.L., Han, V.C. (2023) "Pathogenicity and fungicide sensitivity of Phytophthora parvispora, a new pathogen causing gummosis and root rot disease on citrus trees" Microbial Pathogenesis. DOI: https://doi.org/10.1016/j.micpath.2023.105986

Sruthi, N. U., Srinivasa Rao, P., Bennett, S. J., & Bhattarai, R. R. (2023). "Formulation of a Synergistic Enzyme Cocktail for Controlled Degradation of Sorghum Grain Pericarp" Foods. DOI: https://doi.org/10.3390/foods12020306

Derbyshire M.C., Batley J. and Edwards D. (2022) "Use of multiple ‘omics techniques to accelerate the breeding of abiotic stress tolerant crops" Current Plant Biology. DOI: https://doi.org/10.1016/j.cpb.2022.100262

Andronis, C., Jacques, S., Lipscombe, R. and Tan, K. C. (2022). "Comparative sub-cellular proteome analyses reveals metabolic differentiation and production of effector-like molecules in the dieback phytopathogen Phytophthora cinnamomi." Journal of Proteomics DOI: https://doi.org/10.1016/j.jprot.2022.104725

Cao C.T.H., Derbyshire M.C., Regmi R., Li H., Jones M.G.K. and Wylie S.J. (2022) "Small RNA Analyses of a Ceratobasidium Isolate Infected with Three Endornaviruses" Viruses. DOI: https://doi.org/10.3390/v14102276

Moolhuijzen, P. M., See, P. T., Shi, G., Powell, H. R., Cockram, J., Jørgensen, L. N., Benslimane, H., Strelkov, S. E., Turner, J., Liu, Z., & Moffat, C. S. (2022). "A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology" Microbial Genomics. DOI: https://doi.org/10.1099/mgen.0.000872

Haywood, J., Breese, K. J., Zhang, J., Waters, M. T., Bond, C. S., Stubbs, K. A., & Mylne, J. S. (2022). "A fungal tolerance trait and selective inhibitors proffer HMG-CoA reductase as a herbicide mode-of-action" Nature Communications. DOI: https://doi.org/10.1038/s41467-022-33185-0

Ogaji Y.O., Lee R.C., Sawbridge T.I., Cocks B.G., Daetwyler H.D. and Kaur S. (2022) "De Novo Long-Read Whole-Genome Assemblies and the Comparative Pan-Genome Analysis of Ascochyta Blight Pathogens Affecting Field Pea" Journal of Fungi. DOI: https://doi.org/10.3390/jof8080884

Phong, W. N., Sung, B., Cao, Z., Gibberd, M., Dykes, G. A., Payne, A. D., & Coorey, R. (2022). "Impact of different processing techniques on the key volatile profile, sensory, and consumer acceptance of black truffle (Tuber melanosporum Vittadini)." Journal of Food Science. DOI: https://doi.org/10.1111/1750-3841.16275

Blake S.N., Lee R.C., Russ M.H., Farquharson E.A., Rose J.A., Herdina, Goonetilleke S.N., Farfan-Caceres L., Debler J.W., Syme R.A. and Davidson J.A. (2022) "Phenotypic and Genotypic Diversity of Ascochyta fabae Populations in Southern Australia" Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2022.918211

Sotiropoulos A.G., Arango-Isaza E., Ban T., Barbieri C., Bourras S., Cowger C., Czembor P.C., Ben-David R., Dinoor A., Ellwood S.R., Graf J., Hatta K., Helguera M., Sánchez-Martín J., McDonald B.A., Morgounov A.I., Müller M.C., Shamanin V., Shimizu K.K., Yoshihira T., Zbinden H., Keller B. and Wicker T. (2022) "Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade" Nature Communications. DOI: https://doi.org/10.1038/s41467-022-31975-0

Vadlamani G., Sukhoverkov K.V., Haywood J., Breese K.J., Fisher M.F., Stubbs K.A., Bond C.S. and Mylne J.S. (2022) "Crystal structure of Arabidopsis thaliana HPPK/DHPS, a bifunctional enzyme and target of the herbicide asulam" Plant Communications. DOI: https://doi.org/10.1016/j.xplc.2022.100322

John, E., Singh, K. B., Oliver, R. P. and Tan, K. C. (2022). "Transcription factor lineages in plant-pathogenic fungi, connecting diversity with fungal virulence" Fungal Genet. Biol. DOI: https://doi.org/10.1016/j.fgb.2022.103712

Garg G., Kamphuis L.G., Bayer P.E., Kaur P., Dudchenko O., Taylor C.M., Frick K.M., Foley R.C., Gao L-L., Erez Lieberman A., Edwards D. and Singh K.B. (2022) "A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits" The Plant Journal. DOI: https://doi.org/10.1111/tpj.15885

Cao, Z., Stefanova, K., Gibberd, M., & Rakshit, S. (2022). "Bayesian inference of spatially correlated random parameters for on-farm experiment" Field Crops Research. DOI: https://doi.org/10.1016/j.fcr.2022.108477

Shirdelmoghanloo, H., Chen, K., Paynter, B., Angessa, T. T., Westcott, S., Khan, H. A., Hill, C. B., & Li, C. (2022). "Grain-filling rate improves physical grain quality in barley under heat stress conditions during the grain-filling period. " Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2022.858652

Derbyshire, M.C., Newman, T.E., Khentry, Y., Taiwo, A. (2022) "The evolutionary and molecular features of the broad-host-range plant pathogen Sclerotinia sclerotiorum" Molecular Plant Pathology. DOI: doi.org/10.1111/mpp.13221

Hansen B. D., Leonard E., Mitchell M. C., Easton J., Shariati N., Mortlock M. Y., Schaefer M., & Lamb D. W. (2022) "Current status of and future opportunities for digital agriculture in Australia" Crop & Pasture Science DOI: https://doi.org/10.1071/CP21594

John E., Singh K. B., Oliver R. P., Soyer J. L., Gonzalez J. M., Soo D., Jacques S., & Tan K. C. (2022) "Chromatin-immunoprecipitation reveals the PnPf2 transcriptional network controlling effector-mediated virulence in a fungal pathogen of wheat" bioRxiv DOI: https://doi.org/10.1101/2022.06.16.496517

Knight N. L., Moslemi A., Begum F., Dodhia K. N., Covarelli L., Hills A. L., & Lopez-Ruiz F. (2022) "Detection of Ramularia collo‐cygni from barley in Australia using triplex quantitative and droplet digital PCR" Pest Management Science DOI: https://doi.org/10.1002/ps.6753

Saad A., Macdonald B., Martin A., Knight N. L., & Percy C. (2022) "Winter Cereal Reactions to Common Root Rot and Crown Rot Pathogens in the Field" Agronomy DOI: https://doi.org/10.3390/agronomy12102571

Hu K. X., Awange J, L., Kuhn M., & Zerihun A. (2022) "Irrigated agriculture potential of Australia’s northern territory inferred from spatial assessment of groundwater availability and crop evapotranspiration" Agricultural Water Management DOI: https://doi.org/10.1016/j.agwat.2022.107466

Thi L. K., Yunusa I. A. M., Rab M. A., Zerihun A., & Nguyen H. M. (2022) "Responses in growth, yield and cob protein content of baby corn (Zea mays) to amendment of an acid sulfate soil with lime, organic fertiliser and biochar" CSIRO DOI: https://doi.org/10.1071/cp21812

Ding T., Awange J. L., Scherllin-Pirscher B., Kuhn M., Khandu., Anyah R., Zerihun A., & Bui L. K. (2022) "GNSS Radio Occultation Infilling of the African Radiosonde Data Gaps Reveals Drivers of Tropopause Climate Variability" Journal of Geophysical Research: Atmospheres DOI: https://doi.org/10.1029/2022JD036648

Baddeley A., Davies T. M., Rakshit S., Nair G., & McSwiggan G. (2022) "Diffusion Smoothing for Spatial Point Patterns" Statistical Science DOI: https://doi.org/10.1214/21-sts825

See P. T., Chen K., Marathamuthu K. A., Wood B., Schultz N., Shankar M., & Moffat C. S. (2022) "Virulence assessment of Australian Pyrenophora tritici‐repentis isolates" Plant Pathology DOI: https://doi.org/10.1111/ppa.13484

Haywood J., Breese K. J., Zhang J., Waters M. T., Bond C. S., Stubbs K., A., & Mylne J. S. (2022) "A resistance-gene-directed tolerance trait and selective inhibitors proffer HMG-CoA reductase as a new herbicide mode of action" BioRxiv DOI: https://doi.org/10.1101/2022.04.18.488698

Phong W. N., Gibberd M. R., Dykes G.A, Payne A. D., & Coorey R. (2022) "Methods used for extraction of plant volatiles have potential to preserve truffle aroma: A review" Comprehensive Reviews in Food Science and Food Safety DOI: https://doi.org/10.1111/1541-4337.12927

Phong W. N., Al-Salami H., Gibberd M. R., Dykes G.A, Payne A. D., & Coorey R. (2022) "Comparative evaluation of encapsulation using β‐cyclodextrin versus freeze‐drying for better retention and stabilizing of black Périgord truffle ( Tuber melanosporum ) aroma" Journal of Food Science DOI: https://doi.org/10.1111/1750-3841.16241

Phong W. N., Sung B., Zhanglong C., Gibberd M.R., Dykes G.A, Payne A. D., & Coorey R. (2022) "Impact of different processing techniques on the key volatile profile, sensory, and consumer acceptance of black truffle ( Tuber melanosporum Vittadini)" Journal of Food Science DOI: https://doi.org/10.1111/1750-3841.16275

Chatur P., Johnson S., Coorey R., Bhattarai R.R. and Bennett S.J. (2022) "The Effect of High Pressure Processing on Textural, Bioactive and Digestibility Properties of Cooked Kimberley Large Kabuli Chickpeas" Frontiers in Nutrition. DOI: https://doi.org/10.3389/fnut.2022.847877

Mwape, V., Khoo, K.H.P., Chen, K., Khentry, Y., Newman, T.E., Derbyshire, M.C., Mather, D.E., Kamphuis, L.G. (2022) "Identification of Sclerotinia stem rot resistance quantitative trait loci in a chickpea (Cicer arietinum) recombinant inbred line population" Functional Plant Biology. DOI: https://doi.org/10.1071/FP21216

Shi, G.S., Kariyawasam, G., Liu, S., Leng, Y., Zhong, S., Ali, S., Moolhuijzen, P., Moffat, C.S., Rasmussen, J.B., Friesen, T.L., Faris, J.D., Liu, Z. (2022) "A conserved hypothetical gene is required but not sufficient for Ptr ToxC production in Pyrenophora tritici-repentis" Molecular Plant-Microbe Interactions. DOI: doi.org/10.1094/MPMI-12-21-0299-R

Henares, B.M., Debler, J.W., Farfan-Caceres, L.M., Grime, C.R., Syme, R.A., Blake, S.N., Herdina., Davidson, J.A., Oliver, R.P., Singh, K.B., Kamphuis, L.G., Lee, R.C. (2022) "The novel avirulence effector AlAvr1 from Ascochyta lentis mediates host cultivar specificity of ascochyta blight in lentil" Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.13203

Severn-Ellis, A.A., Schoeman, M.H., Bayer, P.E., Hane, J.K., Rees, D.J.G., Edwards, D., Batley, J. (2022) "Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence" Frontiers in Plant Science. DOI: doi.org/10.3389/fpls.2022.811152

Pires, D. E. V., Stubbs, K. A., Mylne, J. S., & Ascher, D. B. (2022). "cropCSM: designing safe and potent herbicides with graph-based signatures" Briefings in Bioinformatics. DOI: https://doi.org/10.1093/bib/bbac042

Zhang, J., Islam, M. S., Zhao, Y., Anwar, M., Alhabbar, Z., She, M., Yang, R., Juhasz, A., Tang, Q., Chen, J., Liu, H., Jiang, Y., Zhai, S., Hu, X., Rong, J., Zhang, Y., Qing, Y., Liu, Q., Yu, Z., Zhang, Y., Balotf, S., Dowla, M., Afrin, S., Roy, N., Mallik, M. R., Saieed, M. A. U., Rahman, S., Sultana, N., Ahmed, S. A.-S., Florides, C., Chen, K., Sharma, D., Height, N., Biddulph, B., Lu, M., Mayer, J., & Ma, W. (2022). "Non-escaping frost tolerant QTL linked genetic loci at reproductive stage in six wheat DH populations." The Crop Journal. DOI: https://doi.org/10.1016/j.cj.2021.02.015

Sukhoverkov, K. V., Breese, K. J., Debowski, A. W., Murcha, M. W., Stubbs, K. A., & Mylne, J. S. (2022). "Inhibition of chloroplast translation as a new target for herbicides" RSC Chemical Biology. DOI: https://doi.org/10.1039/D1CB00192B

John, E., Jacques, S., Phan, H.T., Liu, L., Pereira, D., Croll, D., Singh, K.B., Oliver, R.P., Tan, K.C. (2022) "Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat" PLOS Pathogens. DOI: https://doi.org/10.1371/journal.ppat.1010149

Harper, L.A., Paton, S., Hall, B., McKay S., Oliver, R.P., Lopez-Ruiz, F.J. (2021) "Fungicide resistance characterised across seven chemical classes in a Botrytis cinerea population isolated from Australian vineyards " Pest Management Science. DOI: https://doi.org/10.1002/ps.6749

Spencer, B., Mazanec, R., Gibberd, M., Zerihun, A. (2021) "Sapling and coppice biomass heritabilities and potential gains from Eucalyptus polybractea progeny trials" Tree Genetics & Genomes. DOI: https://doi.org/10.1007/s11295-021-01499-7

Taylor, C.M., Garg, G., Berger, J.D, Ribalta, F.M., Croser, J.S., Singh, K.B., Cowling, W.A., Kamphuis, L.G., Nelson, M.N. (2021) "A Trimethylguanosine Synthase1-like (TGS1) homologue is implicated in vernalisation and flowering time control" Theoretical and Applied Genetics DOI: https://doi.org/10.1007/s00122-021-03910-2

Taylor, C.M., van der Zanden, J., Saradadevi, R., Berger, J.D., Kamphuis, L.G., Pradhan, A., Sharma, D., Nelson, M.N., Cowling, W.A. (2021) "A multiplex PCR marker perfectly distinguishes between a series of four LanFTc1 alleles regulating flowering time in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Breeding. DOI: https://doi.org/10.1111/pbr.12982

Payne, C.D., Vadlamani, G., Hajiaghaalipour, F., Muhammad, T., Fisher, M.F., Andersson, H.S., Göransson, U., Clark, R.J., Bond, C.S., Mylne, J.S., Rosengren, K.J. (2021) "Solution NMR and racemic crystallography provide insights into a novel structural class of cyclic plant peptides" RSC Chemical Biology. DOI: https://doi.org/10.1039/D1CB00155H

Wallace, M.D., Debowski, A.W., Sukhoverkov, K.V., Mylne, J.S., Stubbs, K.A. (2021) "Herbicidal activity of fluoroquinolone derivatives" Plant Direct. DOI: https://doi.org/10.1002/pld3.348

Payne, C.D., Fisher, M.F., Mylne, J.S., Rosengren, K.J. (2021) "Structural characterization of the PawL-Derived Peptide family, an ancient subfamily of orbitides" Journal of Natural Products. DOI: DOI: 10.1021/acs.jnatprod.1c00672

Sukhoverkov, K.V., Breese, K.J., Debowski, A.W., Murcha, M.W., Stubbs, K.A., Mylne, J.S. (2021) "Inhibition of chloroplast translation as a new target for herbicides" RSC Chemical Biology. DOI: https://doi.org/10.1039/D1CB00192B

Derbyshire, M.C., Harper, L.A., Lopez-Ruiz, F.J. (2021) "Positive Selection of Transcription Factors Is a Prominent Feature of the Evolution of a Plant Pathogenic Genus Originating in the Miocene" Genome Biology and Evolution. DOI: https://doi.org/10.1093/gbe/evab167

Regmi, R., Newman, T.E., Kamphuis, L.G., Derbyshire, M.C. (2021) "Identification of Brassica napus small RNAs responsive to infection by a necrotrophic pathogen" BMC Plant Biology. DOI: https://doi.org/10.1186/s12870-021-03148-6

Mwape, V.W., Mobegi, F.M., Regmi, R., Newman, T.E., Kamphuis, L.G., Derbyshire, M.C. (2021) "Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines" BMC Genomics. DOI: https://doi.org/10.1186/s12864-021-07655-6

Bennett, S.J., Lamichhane, A.R., Thomson, L.L., Lui, K.Y., Michael, P.J. (2021) "Impact of Fungicide Application and Host Genotype on Susceptibility of Brassica napus to Sclerotinia Stem Rot across the South-Western Australian Grain Belt: A Genotype × Environment × Management Study" Agronomy. DOI: https://doi.org/10.3390/agronomy11061170

Moolhuijzen, P., See, P.T., Moffat, C.S. (2021) "The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing" BMC Research Notes. DOI: https://doi.org/10.1186/s13104-021-05751-0

Andronis, C.E., Hane, J.K., Bringans, S., Hardy, G.E.S.J., Jacques, S., Lipscombe, R., Tan, K.C. (2021) "Gene Validation and Remodelling Using Proteogenomics of Phytophthora cinnamomi, the Causal Agent of Dieback" Frontiers in Microbiology. DOI: https://doi.org/10.3389/fmicb.2021.665396

Jones, D.A.B., Moolhuijzen, P.M., Hane, J.K. (2021) "Remote homology clustering identifies lowly conserved families of effector proteins in plant-pathogenic fungi" Mircobial Genomics. DOI: https://doi.org/10.1099/mgen.0.000637

Jones, D.A.B., Rozano, L., Debler, J.W. Mancera, R.L., Moolhuijzen, P.M., Hane, J.K. (2021) "An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens" Scientific Reports DOI: https://doi.org/10.1038/s41598-021-99363-0

Justesen, A.F., Corsi, B., Ficke, A., Hartl, L., Holdgate, S., Nistrup Jørgensen, L., Lillemo, M., Lin, M., Mackay, I.J., Mohler, V., Stadlmeier, M., Tan, K.C., Turner, J., Oliver, R.P., Cockram, J. (2021) "Hidden in plain sight: a molecular field survey of three wheat leaf blotch fungal diseases in North-Western Europe shows co-infection is widespread" European Journal of Plant Pathology. DOI: https://doi.org/10.1007/s10658-021-02298-5

Ge, C., Wentzel, E., D'Souza, N., Chen, K., Oliver, R.P., Ellwood, S.R. (2021) "Adult resistance genes to barley powdery mildew confer basal penetration resistance associated with broad-spectrum resistance" The Plant Genome. DOI: https://doi.org/10.1002/tpg2.20129

Bar, I., Thanjavur Sambasivam, P., Davidson, J., Farfan-Caceres, L.M., Lee, R.C., Hobson, K., Moore, K., Ford, R. (2021) "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia" Mircobial Genomics DOI: http://doi.org/10.1099/mgen.0.000627

Kamphuis, L.G., Garg, G. Foley, R., Singh, K.B. (2021) "Genomic resources for lupins are coming of age" Legume Science DOI: https://doi.org/10.1002/leg3.77

Beckie, H.J., Busi, R., Lopez-Ruiz, F., Umina, P.A. (2021) "Herbicide resistance management strategies: how do they compare with those for insecticides, fungicides and antibiotics?" Pest Management Science DOI: https://doi.org/10.1002/ps.6395

Khambatta, K., Hollings, A., Sauzier, G., Sanglard, L., Klein, A.R., Tobin, M.J., Vongsvivut, J., Gibberd, M.R., Payne, A.d., Naim, F., Hackett, M.J. (2021) "“Wax On, Wax Off”: In Vivo Imaging of Plant Physiology and Disease with Fourier Transform Infrared Reflectance Microspectroscopy" Advanced Science DOI: https://doi.org/10.1002/advs.202101902

Bertazzoni, S., Jones, D., Phan, H.T., Tan, K.C., Hane, J. (2021) "Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome." BMC Genomics DOI: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-021-07699-8

Zhang, J., She, M., Yang, R., Jiang, Y., Qin, Y., Zhai, S., Balotf, S., Zhao, Y., Anwar, M., Alhabbar, Z., Juhász, A., Chen, J., Liu, H., Liu, Q., Zheng, T., Yang, F., Rong, J., Chen, K., Lu, M., Islam, S., & Ma, W. (2021). "Yield-Related QTL Clusters and the Potential Candidate Genes in Two Wheat DH Populations." https://doi.org/10.3390/ijms222111934 DOI: International Journal of Molecular Sciences

Lee, R.C., Farfan-Caceres, L., Debler, J.W., Williams, A.H., Syme, R.A., Henares, B.M. (2021) "Reference genome assembly for Australian Ascochyta lentis isolate A14." G3 DOI: https://doi.org/10.1093/g3journal/jkab006

Taiwo, A., Harper, L., Derbyshire, M. (2021) "Impacts of fludioxonil resistance on global gene expression in the necrotrophic fungal plant pathogen Sclerotinia sclerotiorum." BMC Genomics DOI: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-021-07402-x

Jacques, S., Lenzo, L., Stevens, K., Lawrence, J., Tan, K.C. (2021) "An optimized sporulation method for the wheat fungal pathogen Pyrenophora tritici-repentis." Plant Methods DOI: https://plantmethods.biomedcentral.com/articles/10.1186/s13007-021-00751-4

See, P. T., Chen, K., Marathamuthu, K. A., Wood, B., Schultz, N., Shankar, M., & Moffat, C. S. (2021). "Virulence assessment of Australian Pyrenophora tritici-repentis isolates" Plant Pathology. DOI: https://doi.org/10.1111/ppa.13484

Kariyawasam, G.K., Wyatt, N., Shi, G., Liu, S., Yan, C., Ma, Y., Zhong, S., Rasmussen, J.B., Moolhuijzen, P., Moffat, C.S., Friesen, T.L., Liu, Z. (2021) "A genome-wide genetic linkage map and reference quality genome sequence for a new race in the wheat pathogen Pyrenophora tritici-repentis." Fungal Genetics and Biology. DOI: https://doi.org/10.1016/j.fgb.2021.103571

Milazzo, C., Zulak, K., Muria-Gonzalez, M., Jones, D., Power, M., Bransgrove, K., Bunce, M., Lopez-Ruiz, F. (2021) "High-throughput metabarcoding characterises fungal endophyte diversity in the phyllosphere of a barley crop." APS Publications. DOI: https://apsjournals.apsnet.org/doi/10.1094/PBIOMES-09-20-0066-R

Moolhuijzen, P., Lawrence, J., Ellwood, S. (2021) "Potentiators of disease during barley infection by Pyrenophora teres f. teres in a susceptible interaction." APS Publications. DOI: https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-20-0297-R

Andronis, C.E., Hane, J., Bringans, S., Hardy, G., Jacques, S., Lipscombe, R., Tan, K-C. (2021). "Gene validation and remodelling using proteogenomics of Phytophthora cinnamomi, the causal agent of Dieback." Frontiers Microbiol. DOI: http://dx.doi.org/10.3389/fmicb.2021.665396

Dinglasan E.G., Peressini T., Marathamuthu K.A., See P.T., Snyman L., Platz G., Godwin I., Voss-Fels K., Moffat CS., Hickey L.T. (2021) "Genetic characterisation of adult-plant resistance to tan spot (syn, yellow spot) in wheat." Theoretical and Applied Genetics. DOI: https://doi.org/10.1007/s00122-021-03861-8

See, P.T., Moffat, C.S. (2021) "Evaluation of a Novel Molecular Marker Associated with the Tan Spot Disease Response in Wheat" Agriculture 2021, 11(6), 513. DOI: https://doi.org/10.3390/agriculture11060513

He, T., Angessa, T. T., Hill, C. B., Zhang, X.-Q., Chen, K., Luo, H., Wang, Y., Karunarathne, S. D., Zhou, G., & Tan, C. (2021). "Genomic structural equation modelling provides a whole-system approach for the future crop breeding." Theoretical and Applied Genetics. DOI: https://doi.org/10.1007/s00122-021-03865-4

Phan, H.T., Furuki, E., Hunziker, L., Rybak, K., Tan, KC. (2021) "GWAS analysis reveals distinct pathogenicity profiles of Australian Parastagonospora nodorum isolates and identification of marker-trait-associations to septoria nodorum blotch." Scientific Reports. DOI: https://www.nature.com/articles/s41598-021-87829-0

John, E., Singh, K., Oliver, R., Tan, K-C. (2021). "Transcription factor control of virulence in phytopathogenic fungi." Molecular Plant Pathology - British Society for Plant Pathologists. DOI: https://doi.org/10.1111/mpp.13056

Michael, P.J., Lui, K.Y., Thomson, L.L., Lamichhane, A., Bennett, S.J. (2021) "Impact of preconditioning temperature and duration period on carpogenic germination of diverse Sclerotinia sclerotorium (Lib.) de Bary populations in south-western Australia" Plant Disease DOI: https://doi.org/10.1094/PDIS-09-20-1957-RE

Mwape, V., Khentry, Y., Newman, T., Denton-Giles, M., Derbyshire, M., Chen, K., Berger, J., Kamphuis, L. (2021). "Identification of sources of Sclerotinia sclerotiorum resistance in a collection of wild Cicer germplasm." Plant Disease. DOI: https://doi.org/10.1094/PDIS-02-21-0367-RE

Debler, J., Henares, B., Lee, R. (2021). "Agroinfiltration for transient gene expression and characterisation of fungal pathogen effectors in cool-season grain legume hosts." Plant Cell Reports. DOI: https://link.springer.com/article/10.1007/s00299-021-02671-y

Naim, F., Khambatta, K., Sanglard, L., Sauzier, G., Reinhardt, J., Paterson, D., Zerihun, A., Hackett, M., Gibberd, M. (2021) "Synchrotron X-ray fluorescence microscopy-enabled elemental mapping illuminates the “battle for nutrients” between plant and pathogen" Journal of Experimental Botany DOI: https://doi.org/10.1093/jxb/erab005

Dodhia, K., Cox, B., Oliver, R., Lopez-Ruiz, F. (2021). "Rapid in situ quantification of the strobilurin resistance mutation G143A in the wheat pathogen Blumeria graminis f. sp. tritici." Scientific Reports. DOI: https://www.nature.com/articles/s41598-021-83981-9

Derbyshire, M., Khentry, Y., Severn-Ellis, A., Mwape, V., Mohd Saad, NS., Newman, T., Taiwo, A., Regmi, R., Buchwaldt, L., Denton-Giles, M., Batley, J., Kamphius, L. (2021) "Modeling first order additive × additive epistasis improves accuracy of genomic prediction for sclerotinia stem rot resistance in canola." The Plant Genome. DOI: https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20088

Hill, C. B., Angessa, T. T., Zhang, X. Q., Chen, K., Zhou, G., Tan, C., Wang, P., Westcott, S., & Li, C. (2021). "A global barley panel revealing genomic signatures of breeding in modern Australian cultivars. " The Plant Journal. DOI: https://doi.org/10.1111/tpj.15173

Debler, J.W., Henares, B.M. (2020). "Targeted disruption of Scytalone Dehydratase gene using Agrobacterium tumefaciens-mediated transformation leads to altered melanin production in Ascochyta lentis." Journal of Fungi. DOI: https://doi.org/10.3390/jof6040314

Taylor, C.M., Kamphuis, L.G., Cowling, W.A., Berger, J., Nelson, M.N. (2020) "Genomic applications and resources to dissect flowering time control in narrow-leafed lupin." The Lupin Genome, pp109-137 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_9

Taylor, C.M., Kamphuis, L.G., Cowling, W.A., Nelson, M.N., Berger, J.D. (2020) "Ecophysiology and phenology: Genetic resources for genetic/genomic improvement of narrow-leafed lupin." The Lupin Genome, pp 19-30 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_2

Singh, K.B., Foley, R.C., Garg, G., Kamphuis, L.G. (2020) "Overview of genomic resources available for lupins with a focus on narrow-leafed lupin (Lupinus angustifolius)." The Lupin Genome, pp 31-43 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_3

Shah R.M., Williams A.H., Hane J, Lawrence J., Farfan-Caceres L.M., Debler J., Oliver R.P., Lee R. (2020) "Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14" Genetics GSA G3 DOI: https://doi.org/10.1534/g3.120.401265

See, P.T., Schultz, N., Moffat, C. (2020) "Evaluation of Pyrenophora tritici-repentis infection of wheat heads.” " MDPI Agriculture DOI: https://doi.org/10.3390/agriculture10090417

Polonio, A., Diaz-Martinez, L., Fernandez-Ortuno, D., de Vicente, A., Romero, D.F., Lopez-Ruiz, F., Perez-Garcia, A. (2020) "A hybrid genome assembly resource for podosphaera xanthii, the main causal agent of powdery mildew disease in cucurbits." Molecular Plant-Microbe Interactions DOI: https://doi.org/10.1094/MPMI-08-20-0237-A

Phan, H.T.T., Jones, D.A.B., Rybak, K., Dodhia, K.N., Lopez-Ruiz, F.J., Valade, R., Gout, L., Lebrun, M-C., Brunner, P.C., Oliver, R.P., Tan, K-C. (2020) "Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction." Frontiers in plant science DOI: Phan, H.T.T., Jones, D.A.B., Rybak, K., Dodhia, K.N., Lopez-Ruiz, F.J., Valade, R., Gout, L., Lebrun, M-C., Brunner, P.C., Oliver, R.P., Tan, K-C. (2020)

Newman, T.E, Jacques, S., Grime, C., Kamphuis, F.L., Lee, R.C., Berger, J., Kamphuis, L.G. (2021) "Identification of novel sources of resistance to ascochyta blight in a collection of wild Cicer accessions." Phytopathology DOI: doi.org/10.1094/PHYTO-04-20-0137-R

Newman, T.E, Derbyshire, M.C. (2020) "The Evolutionary and Molecular Features of Broad Host-Range Necrotrophy in Plant Pathogenic Fungi" Frontiers in plant science DOI: https://doi.org/10.3389/fpls.2020.591733

Moolhuijzen, P.M., See, P.T., Moffat, C.S. (2020) "PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis." BMC Genomics DOI: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-07029-4

Moolhuijzen, P.M., Muria-Gonzalez, J.M., Syme, R., Rawlinson, C., See, P.T., Moffat, C.S., Ellwood, S.R. (2020) "Expansion and Conservation of Biosynthetic Gene Clusters in Pathogenic Pyrenophora spp" Toxins DOI: https://doi.org/10.3390/toxins12040242

Michael, P.J., Lui, K.Y., Thomson, L.L., Stefanova, K., Bennett, S.J. (2020) "Carpogenic Germinability of Diverse Sclerotinia sclerotorium Populations Within the Southwestern Australian Grain Belt." Plant Disease DOI: https://doi.org/10.1094/PDIS-12-19-2575-RE

Michael, P.J., Jones, D., White, N., Hane, J.K., Bunce, M., Gibberd, M. (2020) "Crop-zone weed Mycobiomes of the South-Western Australian grain belt." Frontiers in Microbiology DOI: https://doi.org/10.3389/fmicb.2020.581592

Martin, A., Moolhuijzen, P., Tao, Y., McIlroy, J., Ellwood, S.R., Fowler, R.A., Platz, G.J., Kilian, A., Snyman, L. (2020) "Genomic Regions Associated with Virulence in Pyrenophora teres f. teres Identified by Genome-Wide Association Analysis and Biparental Mapping." Phytopathology 110 (4), 881-891. DOI: https://doi.org/10.1094/PHYTO-10-19-0372-R

Mair, W.J., Thomas, G.J., Dodhia, K., Hills, A.L., Jayasena, K.W., Elwood, S.R., Oliver, R.P., Lopez-Ruiz, F.J. (2020) "Parallel evolution of multiple mechanisms for demethylase inhibitor fungicide resistance in the barley pathogen Pyrenophora teres f. sp. maculata" Fungal Genetics and Biology DOI: https://doi.org/10.1016/j.fgb.2020.103475

Lin, M., Corsi, B., Ficke, A,. Tan, K.C., Cockram, J., Lillemo, M. (2020) "Genetic mapping using a wheat multi-founder population reveals a locus on chromosome 2A controlling resistance to both leaf and glume blotch caused by the necrotrophic fungal pathogen Parastagonospora nodorum" Theoretical and Applied Genetics DOI: https://doi.org/10.1007/s00122-019-03507-w

Lin, M., Stadlmeier, M., Mohler, V., Tan, K.C., Ficke, A., Cockram, J., Lillemo, M., (2020) "Identification and cross-validation of genetic loci conferring resistance to Septoria nodorum blotch using a German multi-founder winter wheat population." Theoretical and Applied Genetics DOI: https://doi.org/10.1007/s00122-020-03686-x

Lee, R.C., Farfan-Caceres, L.M., Debler, J.W., Syme, R.A. (2020) "Characterization of Growth Morphology and Pathology, and Draft Genome Sequencing of Botrytis fabae, the Causal Organism of Chocolate Spot of Faba Bean (Vicia faba L.)." Frontiers in Microbiology DOI: https://doi.org/10.3389/fmicb.2020.00217

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Kamphuis, L.G., Foley, R.C., Frick, K.M., Garg, G., Singh, K.B. (2020) "Transcriptome resources paving the way for lupin crop improvement." The Lupin Genome, pp 53-71 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_5

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Graham-Taylor, C., Kamphuis, L.G., Derbyshire, M.C. (2020) "A detailed in silico analysis of secondary metabolite biosynthesis clusters in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum." BMC Genomics DOI: https://doi.org/10.1186/s12864-019-6424-4

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Moolhuijzen, P., Theen See, P., Moffat, C.S., (2019) "A new Pacbio genome sequence of an Australian Pyrenophora tritici-repentis race 1 isolate." BMC DOI: https://doi.org/10.1186/s13104-019-4681-6

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Shu, C., Zhao, M., Anderson, J.P., Garg, G., Singh, K.B., Wenbo Zheng, W., Wang, C., Yang, M., and Erxun Zhou, E. (2019) "Transcriptomic analysis reveals molecular mechanisms of sclerotial development in the rice sheath blight pathogen Rhizoctonia solani AG1-1A" Functional and Integrative Biology DOI: https://link.springer.com/article/10.1007%2Fs10142-019-00677-0

Derbyshire, M.C., Denton-Giles, M., Hane, J.K., Chang, S., Mousavi-Derazmmahelleh, M., Raffaele, S., Buchwaldt, L., Kamphuis, L.G. (2019) "A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum" PLOS One DOI: https://doi.org/10.1371/journal.pone.0214201

Derbyshire, M., Mbengue, M., Barascud, M., Navaud, O., Raffaele, S. (2019) "Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight host candidate genes associated with quantitative disease resistance." Molecular Plant Pathology DOI: https://doi.org/10.1111/mpp.12841

See, P.T., Iagallo, E.M., Oliver, R.P., and Moffat, C.S. (2019) "Heterologous Expression of the Pyrenophora tritici-repentis Effector Proteins ToxA and ToxB, and the Prevalence of Effector Sensitivity in Australian Cereal Crops" Frontiers in Microbiology DOI: https://doi.org/10.3389/fmicb.2019.00182

De Boer, K., Melser, S., Kamphuis, L.G., Garg, G., Frick, K. and Singh, K.B. (2019) "Identification and profiling of narrow-leafed lupin (L. angustifolius) microRNAs during seed development" BMC Genomics DOI: https://doi.org/10.1186/s12864-019-5521-8

Lane, D., Denton-Giles, M., Derbyshire, M., and Kamphuis, L.G. (2019) "Abiotic conditions governing the myceliogenic germination of Sclerotinia sclerotiorum allowing the basal infection of Brassica napus" Australasian Plant Pathology DOI: https://doi.org/10.1007/s13313-019-0613-0

Taylor, C., Kamphuis, L.G., Zhang, W., Garg, G., Bayer, P., Berger, J.D., Edwards, D., Singh, K.B., Cowling, W.A., and Nelson, M.N. (2019) "NDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalisation response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Cell and Environment, 42,174–187. DOI: https://pubmed.ncbi.nlm.nih.gov/29677403/

Muria-Gonzalez, M.J., Zulak, K.G., Allegaert, E., Oliver, R.P., Ellwood, S.R. (2019) "Profile of the in vitro secretome of the barley net blotch fungus, Pyrenophora teres f. teres." Physiological and Molecular Plant Pathology DOI: https://doi.org/10.1016/j.pmpp.2019.101451

Moolhuijzen, P., Theen See, P., Moffat, C.S. (2018) "Exploration of wheat and pathogen transcriptomes during tan spot infection" BMC Genomics DOI: https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-018-3993-2

Derbyshire, M., Gohari, A.M., Mehrabi, R., Kilaru,S., Steinberg, G., Ali, S., Bailey, A., Hammind-Kosack, K., Kema, G.H.J., Rudd, J.J. (2018) "Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophores or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat" Scientific reports 8, Art 17069 DOI: https://www.nature.com/articles/s41598-018-35223-8

Brooks, K.D., Bennett S.J., Hodgson, L.M., Ashworth, M.B. (2018) "Narrow windrow burning canola (Brassica napus L.) residue for Sclerotinia sclerotiorum (Lib.) de Bary sclerotia destruction" Pest Management Science DOI: https://pubmed.ncbi.nlm.nih.gov/29687565/

Moolhuijzen, P., Theen See, P., Oliver, R.P., Moffat, C.S. (2018) "Genomic distribution of a novel Pyrenophora tritici-repentis ToxA insertion element" PLOS One DOI: https://doi.org/10.1371/journal.pone.0206586

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Ellwood, S., Wallwork, H. (2018) "Diseases affecting barley: Net blotches" Cambridge, UK: Burleigh Dodds Science Publishing. Part 1, section 9 DOI: https://shop.bdspublishing.com/checkout/Store/bds/Detail/WorkGroup/3-190-72711

Taylor, C. M., Kamphuis, L. G., Zhang W., Garg, G., Berger, J. D., Mousavi-Derazmahalleh, M., bayer, P., Edwards, D., Singh, K. B., Cowling W. A and Nelson, M. (2018) "INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalisation response and flowering time in narrow-leafed lupin (Lupinus angustifolius) " Plant Cell and Environment. 41: DOI: https://pubmed.ncbi.nlm.nih.gov/29677403/

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Thatcher, L.F., Foley, R.C., Casarotto, H., Gao, L-L., Kamphuis L.G, Melser, S. and Singh K.B. (2018) "The Arabidopsis RNA Polymerase II Carboxyl Terminal Domain (CTD) Phosphatase-Like1 (CPL1) is a biotic stress susceptibility gene" Nature, Scientific Reports. 8: 13454 DOI: https://www.nature.com/articles/s41598-018-31837-0

Syme, R.A., Tan, K., Ryback, K., Friesen, T.L., McDonald, B.A., Oliver, R.P., Hane, J.K. (2018) "Pan-Parastagonospora Comparative Genome Analysis – effector prediction and genome evolution." Genome Biology and Evolution DOI: https://doi.org/10.1093/gbe/evy192

Talbot, J.J., Subedi, S., Halliday, C.L., Hibbs, D.E., Lai, F., Lopez-Ruiz, F.J., Harper, L., Park, R.F., W.S., Biswas, C., Cooley, L., Carter, D., Sorrell, T.C., Barrs, V.R., Chen, S.C-A. (2018) "Surveillance for azole resistance in clinical and environmental isolates of Aspergillus fumigatus in Australia and cyp51A homology modelling of azole-resistant isolates" Journal of Antimicrobial Chemotherapy DOI: https://pubmed.ncbi.nlm.nih.gov/29846581/

Denton-Giles, M., Derbyshire, M., Khentry, Y., Buchwaldt, L., Kamphuis, L.G. (2018) "Partial stem resistance in Brassica napus to highly aggressive and genetically diverse Sclerotinia sclerotiorum isolates from Australia" Canadian Journal of Plant Pathology Vol 40, 20`18 Issue 4 DOI: https://www.tandfonline.com/doi/full/10.1080/07060661.2018.1516699

Abdullah, A.S., Turo, C., Moffat C.S., Lopez-Ruiz, F.J., Gibberd, M.R., Hamblin, J., Zerihun, A., (2018) "Real-Time PCR for Diagnosing and Quantifying Co-infection by Two Globally Distributed Fungal Pathogens of Wheat." Frontiers in Plant Science DOI: https://doi.org/10.3389/fpls.2018.01086

Ellwood, S.R., Piscetek, V., Mair, W.J., Lawrence, J.A., Lopez-Ruiz, F.J., Rawlinson, C. (2018) "Genetic variation of Pyrenophora teres f. teres isolates in Western Australia and emergence of a Cyp51A fungicide resistance mutation." Plant Pathology. Doi: 10.1111/ppa.12924 DOI: https://bsppjournals.onlinelibrary.wiley.com/doi/full/10.1111/ppa.12924

Downie, R.C., Bouvet, L., Furuki, E., Gosman, N., Gardner, K.A., Mackay, I.J., Mantello, C.C., Mellers, G., Phan, H.T.T., Rose, G.A., Tan, K-C., Oliver, R.P., Cockram, J. (2018) "Assessing European wheat sensitivities to Parastagonospora nodorum necrotrophic effectors and fine-mapping the Snn3-B1 locus conferring sensitivity to the effector SnTox3." Frontiers in Plant Science DOI: https://pubmed.ncbi.nlm.nih.gov/30022985/

Bertazzoni, S., Williams, A.H., Jones, D.A., Syme, R.A., Tan, K.C., Hane, J.K. (2018) "Accessories make the outfit: Accessory Chromosomes and other dispensable DNA regions in plant-pathogenic Fungi." Molecular Plant-Microbe Interactions DOI: https://pubmed.ncbi.nlm.nih.gov/29664319/

Mousavi-Derazmahalleh, M., Bayer, P.E., Hane, J.K., Babu, V., Nguyen, H.T., Nelson, M.N., Erskine, W., Varshney, R.K., Papa, R., Edwards, D (2018) "Adapting legume crops to climate change using genomic approaches" Plant, Cell & Environment DOI: https://pubmed.ncbi.nlm.nih.gov/29603775/

Elderfield, J.A., Lopez-Ruiz, F.J., Van den Bosch, F., Cunniffe, N.J. (2018) "Using epidemiological principles to explain fungicide resistance management tactics: why do mixtures outperform alternations?" Phytopathology DOI: https://apsjournals.apsnet.org/doi/10.1094/PHYTO-08-17-0277-R

Anderson, J. P., Kidd, B and Singh, K. B. (2018) "Transcriptome analysis reveals class IX ethylene response factors show specific up-regulation in resistant but not susceptible Medicago truncatula lines following infection with Rhizoctonia solani." European Journal of Plant Pathology. 152: 549-554 DOI: https://doi.org/10.1007/s10658-018-1492-x

Syme, R.A., Martin, A., Wyatt, N.A., Lawrence, J.A., Muria-Gonzalez, M.J., Friesen, T.L., Ellwood, S.R. (2018) "Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions" Frontiers in Genetics. Volume 9, Issue APR, 18 April 2018, Article number 130 DOI: https://www.frontiersin.org/articles/10.3389/fgene.2018.00130/full

Zulak, K.G., Cox, B.A., Tucker, M.A., Oliver, R.P., Lopez-Ruiz, F.J. (2018) "Improved Detection and Monitoring of Fungicide Resistance in Blumeria graminis f.sp. hordei with high-throughput genotype quantification by Digital PCR." Frontiers in Microbiology DOI: https://dx.doi.org/10.3389%2Ffmicb.2018.00706

Lane, D.W., Kamphuis, L.G., Derbyshire, M.C., Denton-Giles, M. (2018) "Heat-dried sclerotia of Sclerotinia sclerotiorum myceliogenically germinate in water and are able to infect Brassica napus" Crop & Pasture Science DOI: https://doi.org/10.1071/CP18109

Frick, K.M., Foley, R.C., Kamphuis, L.G., Siddique, K.H.M., Garg, G., Singh, K.B (2018) "Characterisation of the genetic factors affecting quinolizidine alkaloid biosynthesis and its response to abiotic stress in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Cell and Environment. doi.org/10.1111/pce.13172 DOI: https://onlinelibrary.wiley.com/doi/full/10.1111/pce.13172

Jones, D.A.B., Bertazzoni, S., Turo, C.J., Syme, R. A., Hane, J.K. (2018) "Bioinformatic prediction of plant–pathogenicity effector proteins of fungi" Current Opinion in Microbiology. doi/org/10.1016/j.mb.2018.01.017 DOI: https://pubmed.ncbi.nlm.nih.gov/29462764/

Huyen, T.T. Phan, Rybak, K., Bertazzoni, S., Furuki, E., Dinglasan, E., Hickey, L.T., Oliver, R.P., Tan, K.C. (2018) "Novel sources of resistance to Septoria nodorum blotch in the Vavilov wheat collection identified by genome-wide association studies" Theoretical and Applied Genetics DOI: doi.org/10.1007/s00122-018-3073-y

See, P.T., Marathamuthu, K.A., Iagallo, E.M., Oliver, R.P., and Moffat, C.S. (2018) "Evaluating the importance of the tan spot ToxA-Tsn1 interaction in Australian wheat varieties" Plant Pathology DOI: doi.org/10.1111/ppa.12835

Mousavi-Derazmahalleh, M., Bayer, P.E., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L.G., Singh, K.B., Berger, J.D., Hane, J.K., Edwards, D., Erskine, W., Nelson, M.N (2018) "Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: Narrow-leafed lupin" Theoretical & Applied Genetics DOI: https://doi.org/10.1007/s00122-017-3045-7

Mousavi-Derazmahalleh, M., Bayer, P., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L.G., Singh, K.B., Hane, J., Edwards, D., Erskine, W. and Nelson, M.N. (2018) "Migration and adaptation of wild narrow-leafed lupin" Theoretical and Applied Genetics DOI: https://link.springer.com/article/10.1007/s00122-017-3045-7

Sperschneider, J., Dodds, P.N., Gardiner, D.M., Singh, K.B., Taylor, J.M. (2018) "Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0" British Society for Plant Pathology. DOI: https://doi.org/10.1111/mpp.12682

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Dinglasan, E.G., Godwin, I.D., Phan, H.T.T., Tan, K.C., Platz, G.J., Hickey, L.T. (2018) "Vavilov wheat accessions provide useful sources of resistance to tan spot (syn. yellow spot) of wheat." Plant Pathology. DOI: https://doi.org/10.1111/ppa.12822

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Anderson, J.P., Sperschneider, J., Win, J., Kidd, B., Yoshida, K., Hane, J., Saunders, D.G.O, Singh, K.B. (2017) "Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors." Scientific Reports. DOI: https://doi.org/10.1038/s41598-017-10405-y

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Rybak, K., See, P.T., Phan, H.T.T., Syme, R.A., Moffat, C.S., Oliver, R.P., Tan, K-C. (2017) "A functionally conserved Zn2 Cys6 binuclear cluster transcription factor class regulates necrotrophic effector gene expression and host-specific virulence of two major Pleosporales fungal pathogens of wheat." Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.12511

van den Bosch, F., Lopez-Ruiz, F.J., Oliver, R.P., Paveley, N., Helps, J., van den Berg, F. (2017) "Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops." Plant Pathology. DOI: https://doi.org/10.1111/ppa.12787

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Idnurm, A., Urquhart, A.S., Vummadi, D.R., Chang, S., Van de Wouw, A.P., Lopez-Ruiz, F.J. (2017) "Spontaneous and CRISPR/Cas9-induced mutation of the osmosensor histidine kinase of the canola pathogen Leptosphaeria maculans." Fungal Biology and Biotechnology. DOI: https://doi.org/10.1186/s40694-017-0043-0

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Clarkson, J.P., Warmington, R.J., Walley, P.G., Denton-Giles, M., Barbetti M.J., Brodal, G., Nordskog, B. (2017) "Population structure of Sclerotinia subarctica and Sclerotinia sclerotiorum in England, Scotland and Norway." Frontiers in Microbiology. DOI: https://doi.org/10.3389/fmicb.2017.00490

Abdullah, A.S., Moffat, C.S., Lopez-Ruiz, F.J., Gibberd, M.R., Hamblin, J., Zerihun, A. (2017) "Host–Multi-Pathogen Warfare: Pathogen Interactions in Co-infected Plants." Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2017.01806

Badet, T., Peyraud, R., Mbengue, M., Navaud, O., Derbyshire, M., Oliver, R.P., Barbacci, A., Raffaele, S. (2017) "Codon optimization underpins generalist parasitism in fungi." eLife. DOI: https://doi.org/10.7554/eLife.22472.001

Mair, W., Lopez-Ruiz, F., Stammler, G., Clark, W., Burnett, F., Holloman, D., Ishii, H., Thind, T.S., Brown, J.K.M., Fraaije, B., Cools, H., Shaw, M., Fillinger, S., Walker, A-S., Mellado, E., Schnabel, G., Mehl, A., Oliver, R.P. (2016) "Proposal for a unified nomenclature for target-site mutations associated with resistance to fungicides" Pest Management Science DOI: doi.org/10.1002/ps.4301

Oliver. R.P., Tan, K.C., Moffat, C.S. (2016) "Necrotrophic Pathogens of Wheat" Encyclopedia of Food Grains (Second Edition) DOI: doi.org/10.1016/B978-0-12-394437-5.00240-0

Anderson, J.P., Hane, J.K., Stoll, T., Pain, N., Hastie, M.L., Parwinder, K., Hoogland, C., Gorman, J.J., Singh, K.B. (2016) "Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth" Data in Brief DOI: doi.org/10.1016/j.dib.2016.05.042

Ge, X., Deng, W., Lee, Z.Z., Lopez-Ruiz, F.J., Schweizer, P., Ellwood, S.R. (2016) "Tempered mlo broad-spectrum resistance to barley powdery mildew in an Ethiopian landrace" Scientific Reports DOI: 10.1038/srep29558

Lu, X., Kracher, B., Saur, I.M.L., Bauer, S., Ellwood, S.R., Wise, R., Yaeno, T., Maekawa, T., Schulze-Lefert, P. (2016) "Allelic barley MLA immune receptors recognize sequence-unrelated avirulence effectors of the powdery mildew pathogen" PNAS DOI: doi.org/10.1073/pnas.1612947113

Anderson, J.P., Hane, J.K., Stoll, T., Pain, N., Hastie, M.L., Kaur, P., Hoogland, C., Gorman, J.J., Singh, K.B. (2016) "Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts" Molecular & Cellular Proteomics DOI: 10.1074/mcp.M115.054502

Testa, A.C., Oliver, R.P., Hane, J.K. (2016) "OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes" Genome Biology and Evolution DOI: doi.org/10.1093/gbe/evw121

See, P.T., Moffat, C.S., Morina, J. Oliver, R.P. (2016) "Evaluation of a Multilocus Indel DNA Region for the Detection of the Wheat Tan Spot Pathogen Pyrenophora tritici-repentis" Plant Disease DOI: doi.org/10.1094/PDIS-03-16-0262-RE

Gao, Y., Liu, Z., Faris, J.D., Richards, J., Brueggeman, R.S., Li, X., Oliver, R.P., McDonald, B.A., Friesen, T.L. (2016) "Validation of Genome-Wide Association Studies as a Tool to Identify Virulence Factors in Parastagonospora nodorum" Phytopathology DOI: doi.org/10.1094/PHYTO-02-16-0113-FI

John, E., Lopez-Ruiz, F., Rybak, K., Mousley, C.J., Oliver, R.P., Tan, K.C. (2016) "Dissecting the role of histidine kinase and HOG1 mitogen-activated protein kinase signalling in stress tolerance and pathogenicity of Parastagonospora nodorum on wheat" Microbiology DOI: doi.org/10.1099/mic.0.000280

Hane, J.K., Ming, Y., Kamphuis, L.G., Nelson, M.N., Garg, G., Atkins, C.A., Bayer, P.E., Bravo, A., Bringans, S., Cannon, S., Edwards, D., Foley, R., Gao, L., Harrison, M.J., Huang, W., Hurgobin, B., Li, S., Liu, C., McGrath, A., Morahan, G., Murray, J., Weller, J., Jian, J., Singh, K.B. (2016) "A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution" Plant Biotechnology Journal DOI: doi.org/10.1111/pbi.12615

Derbyshire, M.C., Denton-Giles, M. (2016) "The control of sclerotinia stem rot on oilseed rape (Brassica napus): current practices and future opportunities" Plant Pathology DOI: doi.org/10.1111/ppa.12517

Phan, H.T.T., Rybak, K., Furuki, E., Breen, S., Solomon, P.S., Oliver, R.P., Tan, K.C. (2016) "Differential effector gene expression underpins epistasis in aplant fungal disease" The Plant Journal DOI: doi.org/10.1111/tpj.13203

De Wit, P.J.G.M., Testa, A.C., Oliver, R.P. (2016) "Fungal Plant Pathogenesis Mediated by Effectors" Microbiology Spectrum DOI: doi.org/10.1128/microbiolspec.FUNK-0021-2016

Williams. A.H., Sharma, M., Thatcher, L.F., Azam, S., Hane, J.K., Sperschneider, J., Kidd, B.N., Anderson, J.P., Ghosh, R., Lichtenzveig, J., Corby Kistler, H., Shea, T., Young, S., Buck, S.A., Kamphuis, L.G., Saxena, R., Pande, S., Ma, L., Varshney, R.K., Singh, K.B (2016) "Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors" BMC Genomics DOI: 10.1186/s12864-016-2486-8

Syme, R.A., Tan, K.C., Hane, J.K., Dodhia, K., Stoll, T., Hastie, M., Furuki, E., Ellwood, S.R., Williams, A.H., Tan, Y., Testa, A.C., Gorman, J.J., Oliver, R.P. (2016) "Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics" PLoS ONE DOI: doi.org/10.1371/journal.pone.0147221

Foley, R.C., Kidd, B.N., Hane, J.K., Anderson, J.P., Singh, K.B. (2016) "Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat" PLoS ONE DOI: doi.org/10.1371/journal.pone.0152548

McDonald, M.C., McGinness, L., Hane J.K., Williams, A.H., Milgate, A., Solomon, P.S (2016) "Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici" G3 Genes | Genomes | Genetics DOI: doi.org/10.1534/g3.115.025197

Mair, W.J., Deng, W., Mullins, J.G.L., West, S., Wang, P., Besharat, N., Ellwood, S.R., Oliver, R.P., Lopez-Ruiz, F.J. (2016) "Demethylase Inhibitor Fungicide Resistance in Pyrenophora teres f. sp. teres Associated with Target Site Modification and Inducible Overexpression of Cyp51" Frontiers in Microbiology DOI: doi.org/10.3389/fmicb.2016.01279

Oliver, R.P (2016) "Fungicide resistance management in practice; mixtures, alternations and cross resistance patterns" Journal of Plant Pathology DOI: 10.4454/jpp.v98i4sup.3775

Tucker, M.A., Lopez-Ruiz, F., Jayasena, K.W., Oliver, R.P. (2015) "Origin of Fungicide-Resistant Barley Powdery Mildew in Western Australia: Lessons to Be Learned" Fungicide Resistance in Plant Pathogens “Principles and a Guide to Practical Management” DOI: 10.1007/978-4-431-55642-8

van den Bosch, F., Fraaije, B., Oliver, R.P., van den Berg, F., Paveley, N. (2015) "The Use of Mathematical Models to Guide Fungicide Resistance Management Decisions" Fungicide Resistance in Plant Pathogens DOI: 10.1007/978-4-431-55642-8_4

van den Bosch, F., Paveley, N., Fraaije, B., van den Berg, F., Oliver, R. (2015) "Evidence based resistance management" Fungicide Resistance in Plant Pathogens Principles and a Guide to Practical Management DOI: 10.1007/978-4-431-55642-8_5

Testa, A., Oliver, R.P., Hane, J.K (2015) "Overview of genomic and bioinformatic resources for Zymoseptoria tritici" Fungal Genetics and Biology DOI: doi.org/10.1016/j.fgb.2015.04.011

McDonald, M.C., Williams, A.H., Milgate, A., Pattemore, J.A., Solomon, P.S., Hane, J.K. (2015) "Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici" Fungal Genetics and Biology DOI: doi.org/10.1016/j.fgb.2015.04.012

Gao, Y., Faris, J.D., Liu, Z., Kim, Y.M., Syme, R.A., Oliver, R.P., Xu, S.S., Friesen, T.L. (2015) "Identification and Characterization of the SnTox6-Snn6 Interaction in the Parastagonospora nodorum–Wheat Pathosystem" APS Publications DOI: doi.org/10.1094/MPMI-12-14-0396-R

Chooi, Y.H., Krill, C., Barrow, R.A., Chen, S., Trengove, R., Oliver, R.P., Solomon, P.S. (2015) "An In Planta-Expressed Polyketide Synthase Produces (R)-Mellein in the Wheat Pathogen Parastagonospora nodorum" Applied and Environmental Microbiology Journal DOI: doi.org/10.1128/AEM.02745-14

Testa, A.C., Hane, J.K., Ellwood, S.R., Oliver, R.P. (2015) "CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts" BMC Genomics DOI: doi.org/10.1186/s12864-015-1344-4

Foley, R.C., Jimenez-Lopez, J.C., Kamphuis, L.G., Hane, J.K., Melser, S., Singh, K.B. (2015) "Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches" BMC Plant Biology DOI: doi.org/10.1186/s12870-015-0485-6

Thatcher, L.F., Kamphuis, L.G., Hane, J.K., Oñate-Sánchez, L., Singh, K.B. (2015) "The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress" PLOS ONE DOI: doi.org/10.1371/journal.pone.0126978

Cockram, J., Scuderi, A., Barber, T., Furuki, E., Gardner, K.A., Gosman, N., Kowalczyk, R., Phan, H.T., Rose, G.A., Tan, K.C., Oliver, R.P., Mackay, I.J. (2015) "Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population" G3 - Genes Genomes Genetics DOI: 10.1534/g3.115.021584

Tan, K.C., Phan, H.T.T., Rybak, K., John, E., Chooi, Y.H., Solomon, P.S., Oliver, R.P. (2015) "Functional redundancy of necrotrophic effectors – consequences for exploitation for breeding" Frontiers in Plant Science DOI: doi.org/10.3389/fpls.2015.00501

Oliver, R.P. (2014) "A reassessment of the risk of rust fungi developing resistance to fungicides" Pest Management Science DOI: 10.1002/ps.3767

Tan, K.C., Oliver, R.P (2014) "12 Metabolomics and Proteomics to Dissect Fungal Phytopathogenicity" Fungal Genomics DOI: 10.1007/978-3-642-45218-5_12

Moffat, C.S., See, P.T., Oliver, R.P. (2014) "Leaf yellowing of the wheat cultivar Mace in the absence of yellowspot disease" Australasian Plant Pathology DOI: 10.1007/s13313-014-0335-2

Vela-Corcia, D., Bellón-Gómez, D., Lopez-Ruiz, F., Tores, J.A., Perez-Garcia, A. (2014) "The Podosphaera fusca TUB2 gene, a molecular “Swiss Army knife” with multiple applications in powdery mildew research" Fungal Biology DOI: doi.org/10.1016/j.funbio.2013.12.001

Tan, K.C., Waters, O.D.C., Rybak, K., Antoni, E., Furuki, E. Oliver, R.P. (2014) "Sensitivity to three Parastagonospora nodorum necrotrophic effectors in current Australian wheat cultivars and the presence of further fungal effectors" Crop and Pasture Science DOI: doi.org/10.1071/CP13443

Oliver, R.P., Hewitt, H.G. (2014) "Fungicides in crop protection" CAB eBooks DOI: 10.1079/9781780641669.0000

Vleeshouwers, V.G.A.A., Oliver, R.P (2014) "Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens" Molecular Plant-Microbe Interactions DOI: 10.1094/MPMI-10-13-0313-IA

Moffat, C.S., See, P.T., Oliver, R.P. (2014) "Generation of a ToxA knockout strain of the wheat tan spot pathogen Pyrenophora tritici-repentis" Molecular Plant Pathology DOI: doi.org/10.1111/mpp.12154

Oliver, R., Lichtenzveig, J., Tan, K.C., Waters, O., Rybak, K., Lawrence, J., Friesen, T., Burges, P. (2014) "Absence of detectable yield penalty associated with insensitivity to Pleosporales necrotrophic effectors in wheat grown in the West Australian wheat belt" Plant Pathology DOI: doi.org/10.1111/ppa.12191

Tucker, M.A., Moffat, C.S., Ellwood, S.R., Tan, K.C., Jayasena, K, Oliver, R.P. (2014) "Development of genetic SSR markers in Blumeria graminis f. sp. hordei and application to isolates from Australia" Plant Pathology DOI: doi.org/10.1111/ppa.12258

Pattemore, J.A., Hane, J.K., Williams, A.H., Wilson, B.A.L., Stodart, B.J., Ash, G.J. (2014) "The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species" BMC Genomics DOI: 10.1186/1471-2164-15-660

Cowley, R., Luckett, D.J., Ash, G.J., Harper, J.D.I., Vipin, C.A., Raman, H., Ellwood, S.R. (2014) "Identification of QTLs associated with resistance to Phomopsis pod blight (Diaporthe toxica) in Lupinus albus" Breeding Science DOI: 10.1270/jsbbs.64.83

Hane, J.K., Anderson, J.P., Williams, A.H., Sperschneider, J., Singh, K.B. (2014) "Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8" PLOS Genetics DOI: doi.org/10.1371/journal.pgen.1004281

Kamphuis, L.G., Hane, J.K., Nelson, M.N., Gao, L., Atkins, C.A., Singh, K.B. (2014) "Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers" Plant Biotechnology Journal DOI: doi.org/10.1111/pbi.12229

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