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Derbyshire M. C. and Raffaele S. (2023) "Till death do us pair: Co-evolution of plant–necrotroph interactions" Current Opinion in Plant Biology. DOI: https://doi.org/10.1016/j.pbi.2023.102457
Newman T. E., Jacques S., Grime C., Mobegi F. M., Kamphuis F. L., Khentry Y., Lee R. C. and Kamphuis L. G. (2023) "Genetic dissection of domestication traits in interspecific chickpea populations" The Plant Genome. DOI: https://doi.org/10.1002/tpg2.20408
Regmi, R., Newman, T.E., Khentry, Y., Kamphuis, L.G., Derbyshire, M.C. (2023). "Genome-wide identification of Sclerotinia sclerotiorum small RNAs and their endogenous targets" BMC Genomics. DOI: https://doi.org/10.1186/s12864-023-09686-7
Rozano, L., Hane, J.K., Mancera, R.L (2023). "The Molecular Docking of MAX Fungal Effectors with Plant HMA Domain-Binding Proteins." International Journal of Molecular Sciences. DOI: https://doi.org/10.3390/ijms242015239
Hafez M, Gourlie R, McDonald M, Telfer M, Carmona M, Sautua F, Moffat C, Moolhuijzen P, See PT, Aboukhaddour R. (2023) "Evolution of the ToxB gene in Pyrenophora tritici-repentis and related species" Mol Plant Microbe Interact. DOI: https://doi.org/10.1094/mpmi-08-23-0114-fi
Han, V.C, Michael, P.J., Swift, B., Bennett, S.J. (2023) "Biological control of Sclerotinia sclerotiorum: Modes of action of biocontrol agents, soil organic amendments, and soil microbiome manipulation" Biological Control. DOI: https://doi.org/10.1016/j.biocontrol.2023.105346
Talapov T, Gunes N, Bagriyanik Z, Demirel O, Dedecan O, Uygun AE, Akvec O, Kahraman A, Kamphuis LG and Can C. (2023) "First report of Ascochyta rabiei infections on endemic Turkish populations of Cicer bijugum and C. turcicum" Plant Disease. DOI: https://doi.org/10.1094/PDIS-02-23-0393-PDN
Derbyshire, M.C., Raffaele, S., (2023). "Surface frustration re-patterning underlies the structural landscape and evolvability of fungal orphan candidate effectors" Nature Communications. DOI: https://doi.org/10.1038/s41467-023-40949-9
Ranawaka, B., An, J., Lorenc, M.T., Jung, H., Sulli, M., Aprea, G., Roden, S., Llaca, V., Hayashi, S., Asadyar, L., LeBlanc, Z., Ahmed, Z., Naim, F., Bolzan de Campos, S., Cooper, T., de Felippes, F.F., Dong, P., Zhong, S., Garcia-Carpintero, V., Orzaez, D., Dudley, K.J., Bombarely, A., Bally, J., Winefield, C., Giuliano, G., Waterhouse, P.M. (2023) "A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology." Nature Plants. DOI: https://doi.org/10.1038/s41477-023-01489-8
Jones D, Fornarelli R, Derbyshire M, Gibberd M, Barker K, Hane J. (2023). "The pursuit of genetic gain in agricultural crops through the application of machine-learning to genomic prediction" Front. Genet. DOI: https://doi.org/10.3389/fgene.2023.1186782
Hodgson, L.M., Rakshit, S., Lopez-Ruiz, F.J., Gibberd, M., Thomas, G., Zerihun, A. (2023) "Spatial dependency in stubble-borne Pyrenophora teres f. teres and influence of sample support size on DNA concentration and fungicide resistance frequency." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-02-23-0062-R
Muria-Gonzalez, M.J., Lawrence, J.A., Palmiero, E., D'Souza, N.K., Gupta, S., Ellwood, S.R. (2023) "Major Susceptibility Gene Epistasis over Minor Gene Resistance to Spot Form Net Blotch in a Commercial Barley Cultivar." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-10-22-0376-R
Tran, Q.V., Ha, C.V., Vvedensky, V.V., Han, V.C. (2023) "Current status and characterization of Phytophthora species associated with gummosis of citrus in Northern Vietnam" Journal of Phytopathology. DOI: https://doi.org/10.1111/jph.13204
Michael P. J., Rijal Lamichhane A., Bennett S. J. (2023) "Temperature and Isolate Are Important Determinants of Brassica napus Susceptibility to Aggressive Sclerotinia sclerotiorum Isolates" Agronomy. DOI: https://doi.org/10.3390/agronomy13061606
Stefanova, K.T., Brown, J., Grose, A., Cao, Z., Chen, K., Gibberd, M. and Rakshit, S., (2023). "Statistical analysis of comparative experiments based on large strip on-farm trials. " Field Crops Research. DOI: https://doi.org/10.1016/j.fcr.2023.108945
Moolhuijzen, P., Ge, C., Palmiero, E., Ellwood, S.R. (2023) "A unique resistance mechanism is associated with RBgh2 barley powdery mildew adult plant resistance." Theoretical and Applied Genetics. DOI: https://doi.org/10.1007/s00122-023-04392-0
Moolhuijzen, P., Sanglard, L. M. V. P., Paterson, D. J., Gray, S., Khambatta, K., Hackett, M. J., Zerihun, A., Gibberd, M. R., & Naim, F. (2023). "Spatiotemporal patterns of wheat response to Pyrenophora tritici-repentis in asymptomatic regions revealed by transcriptomic and X-ray fluorescence microscopy analyses" Journal of Experimental Botany. DOI: https://doi.org/10.1093/jxb/erad183
Derbyshire, M. C., Marsh, J., Tirnaz, S., Nguyen, H. T., Batley, J., Bayer, P. E., & Edwards, D. (2023). "Diversity of fatty acid biosynthesis genes across the soybean pangenome." The Plant Genome DOI: https://doi.org/10.1002/tpg2.20334
See, P. T., & Moffat, C. S. (2023). "Profiling the Pyrenophora tritici-repentis secretome: The Pf2 transcription factor regulates the secretion of the effector proteins ToxA and ToxB" Molecular Microbiology. DOI: https://doi.org/10.1111/mmi.15058
Olita, H. T., Sung, B., Hooper, B., Cao, Z., Lopez-Ruiz, F., & Gibberd, M. (2023) "The socio-economic impact of fungicide resistance in West Australia's Wheatbelt." Advances in Agronomy. DOI: https://doi.org/10.1016/bs.agron.2023.03.005
Newman, T. E., Kim, H., Khentry Y., Sohn, K. H., Derbyshire M. and Kamphuis L. G. (2023) "The broad host range pathogen Sclerotinia sclerotiorum produces multiple effector proteins that induce host cell death intracellularly." Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.13333
Hassett, K., Muria-Gonzalez, M. J., Turner, A., McLean, M. S., Wallwork, H., Martin, A., & Ellwood, S. R. (2023). "Widespread genetic heterogeneity and genotypic grouping associated with fungicide resistance among barley spot form net blotch isolates in Australia." G3 Genes|Genomes|Genetics. DOI: https://doi.org/10.1093/g3journal/jkad076
van den Bosch, F., Zerihun, A., Poole, N., Thomas, G., & Lopez-Ruiz, F. J. (2023). "Adjusting fungicide treatment programmes when resistance is developing: The case of spot-form net-blotch in Western Australia." Plant Pathology. DOI: https://doi.org/10.1111/ppa.13726
Rozano, L., Mukuka, Y. M., Hane, J. K., & Mancera, R. L. (2023). "Ab Initio Modelling of the Structure of ToxA-like and MAX Fungal Effector Proteins." International Journal of Molecular Sciences. DOI: https://doi.org/10.3390/ijms24076262
Rozano, L., Jones, D. A. B., Hane, J. K., & Mancera, R. L. (2023). "Template-Based Modelling of the Structure of Fungal Effector Proteins." Molecular Biotechnology. DOI: https://doi.org/10.1007/s12033-023-00703-4
Henares, B. M., Blake, S. N., Farfan-Caceres, L., Tahghighi, H., Debler, J. W., Russ, M. H., Farquharson, E. A., Rose, J. A., Khani, M., Davidson, J., Kamphuis, L. G., & Lee, R. C. (2023). "Virulence profiles and genome-wide association study for Ascochyta lentis isolates collected from Australian lentil-growing regions." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-10-22-0397-R
Newman, T. E., Khentry Y., Leo A., Lindbeck K., Kamphuis L. G., and Derbyshire M. (2023) "Association mapping combined with whole genome sequencing data reveals candidate causal variants for sclerotinia stem rot resistance in Brassica napus." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-06-22-0217-FI
Taylor, J., Jorgensen, D., Moffat, C. S., Chalmers, K. J., Fox, R., Hollaway, G. J., Cook, M. J., Neate, S. M., See, P. T., & Shankar, M. (2023). "An international wheat diversity panel reveals novel sources of genetic resistance to tan spot in Australia" Theoretical and Applied Genetics. DOI: https://doi.org/10.1007/s00122-023-04332-y
Aboukhaddour, R., Abdel-Fattah, M. H., McDonald, M., Moffat, C., Navathe, S., Friesen, T. L., Strelkov, S. E., Oliver, R. P., Tan, K.-C., Liu, Z., Moolhuijzen, P., Phan, H., See, P. T., & Solomon, P. (2023). "A revised nomenclature for ToxA haplotypes across multiple fungal species" Phytopathology. DOI: https://doi.org/10.1094/PHYTO-01-23-0017-SC
Hodgson, L. M., Cox, B. A., Lopez-Ruiz, F. J., Gibberd, M. R., Thomas, G. J., & Zerihun, A. (2023). "Optimized Sample Processing Pipeline for PCR-Based Fungicide Resistance Quantification of Stubble-Borne Fungal Pathogens." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-07-22-0239-R
Lee, R. C., Grime, C. R., O'Driscoll, K., Khentry, Y., Farfan-Caceres, L. M., Tahghighi, H., & Kamphuis, L. G. (2023). "Field Pea (Pisum sativum) Germplasm Screening for Seedling Ascochyta Blight Resistance and Genome-Wide Association Studies Reveal Loci Associated with Resistance to Peyronellaea pinodes and Ascochyta koolunga." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-02-22-0051-R
See, P. T., Marathamuthu, K., Cupitt, C., Iagallo, E., & Moffat, C. (2023). "A race profile of tan spot in Australia reveals race 2 isolates harbouring ToxC1" Phytopathology. DOI: https://doi.org/10.1094/PHYTO-11-22-0422-R
Tran, Q.V., Ha, C.V., Vvedensky, V.V., Le, T.T.L., Han, V.C. (2023) "Pathogenicity and fungicide sensitivity of Phytophthora parvispora, a new pathogen causing gummosis and root rot disease on citrus trees" Microbial Pathogenesis. DOI: https://doi.org/10.1016/j.micpath.2023.105986
Sruthi, N. U., Srinivasa Rao, P., Bennett, S. J., & Bhattarai, R. R. (2023). "Formulation of a Synergistic Enzyme Cocktail for Controlled Degradation of Sorghum Grain Pericarp" Foods. DOI: https://doi.org/10.3390/foods12020306
Derbyshire M.C., Batley J. and Edwards D. (2022) "Use of multiple ‘omics techniques to accelerate the breeding of abiotic stress tolerant crops" Current Plant Biology. DOI: https://doi.org/10.1016/j.cpb.2022.100262
Andronis, C., Jacques, S., Lipscombe, R. and Tan, K. C. (2022). "Comparative sub-cellular proteome analyses reveals metabolic differentiation and production of effector-like molecules in the dieback phytopathogen Phytophthora cinnamomi." Journal of Proteomics DOI: https://doi.org/10.1016/j.jprot.2022.104725
Cao C.T.H., Derbyshire M.C., Regmi R., Li H., Jones M.G.K. and Wylie S.J. (2022) "Small RNA Analyses of a Ceratobasidium Isolate Infected with Three Endornaviruses" Viruses. DOI: https://doi.org/10.3390/v14102276
Moolhuijzen, P. M., See, P. T., Shi, G., Powell, H. R., Cockram, J., Jørgensen, L. N., Benslimane, H., Strelkov, S. E., Turner, J., Liu, Z., & Moffat, C. S. (2022). "A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology" Microbial Genomics. DOI: https://doi.org/10.1099/mgen.0.000872
Haywood, J., Breese, K. J., Zhang, J., Waters, M. T., Bond, C. S., Stubbs, K. A., & Mylne, J. S. (2022). "A fungal tolerance trait and selective inhibitors proffer HMG-CoA reductase as a herbicide mode-of-action" Nature Communications. DOI: https://doi.org/10.1038/s41467-022-33185-0
Ogaji Y.O., Lee R.C., Sawbridge T.I., Cocks B.G., Daetwyler H.D. and Kaur S. (2022) "De Novo Long-Read Whole-Genome Assemblies and the Comparative Pan-Genome Analysis of Ascochyta Blight Pathogens Affecting Field Pea" Journal of Fungi. DOI: https://doi.org/10.3390/jof8080884
Phong, W. N., Sung, B., Cao, Z., Gibberd, M., Dykes, G. A., Payne, A. D., & Coorey, R. (2022). "Impact of different processing techniques on the key volatile profile, sensory, and consumer acceptance of black truffle (Tuber melanosporum Vittadini)." Journal of Food Science. DOI: https://doi.org/10.1111/1750-3841.16275
Blake S.N., Lee R.C., Russ M.H., Farquharson E.A., Rose J.A., Herdina, Goonetilleke S.N., Farfan-Caceres L., Debler J.W., Syme R.A. and Davidson J.A. (2022) "Phenotypic and Genotypic Diversity of Ascochyta fabae Populations in Southern Australia" Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2022.918211
Sotiropoulos A.G., Arango-Isaza E., Ban T., Barbieri C., Bourras S., Cowger C., Czembor P.C., Ben-David R., Dinoor A., Ellwood S.R., Graf J., Hatta K., Helguera M., Sánchez-Martín J., McDonald B.A., Morgounov A.I., Müller M.C., Shamanin V., Shimizu K.K., Yoshihira T., Zbinden H., Keller B. and Wicker T. (2022) "https://doi.org/10.1038/s41467-022-31975-0" Nature Communications. DOI: https://doi.org/10.1038/s41467-022-31975-0
Vadlamani G., Sukhoverkov K.V., Haywood J., Breese K.J., Fisher M.F., Stubbs K.A., Bond C.S. and Mylne J.S. (2022) "Crystal structure of Arabidopsis thaliana HPPK/DHPS, a bifunctional enzyme and target of the herbicide asulam" Plant Communications. DOI: https://doi.org/10.1016/j.xplc.2022.100322
John, E., Singh, K. B., Oliver, R. P. and Tan, K. C. (2022). "Transcription factor lineages in plant-pathogenic fungi, connecting diversity with fungal virulence" Fungal Genet. Biol. DOI: https://doi.org/10.1016/j.fgb.2022.103712
Garg G., Kamphuis L.G., Bayer P.E., Kaur P., Dudchenko O., Taylor C.M., Frick K.M., Foley R.C., Gao L-L., Erez Lieberman A., Edwards D. and Singh K.B. (2022) "A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits" The Plant Journal. DOI: https://doi.org/10.1111/tpj.15885
Cao, Z., Stefanova, K., Gibberd, M., & Rakshit, S. (2022). "Bayesian inference of spatially correlated random parameters for on-farm experiment" Field Crops Research. DOI: https://doi.org/10.1016/j.fcr.2022.108477
Shirdelmoghanloo, H., Chen, K., Paynter, B., Angessa, T. T., Westcott, S., Khan, H. A., Hill, C. B., & Li, C. (2022). "Grain-filling rate improves physical grain quality in barley under heat stress conditions during the grain-filling period. " Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2022.858652
Derbyshire, M.C., Newman, T.E., Khentry, Y., Taiwo, A. (2022) "The evolutionary and molecular features of the broad-host-range plant pathogen Sclerotinia sclerotiorum" Molecular Plant Pathology. DOI: doi.org/10.1111/mpp.13221
Chatur P., Johnson S., Coorey R., Bhattarai R.R. and Bennett S.J. (2022) "The Effect of High Pressure Processing on Textural, Bioactive and Digestibility Properties of Cooked Kimberley Large Kabuli Chickpeas" Frontiers in Nutrition. DOI: https://doi.org/10.3389/fnut.2022.847877
Mwape, V., Khoo, K.H.P., Chen, K., Khentry, Y., Newman, T.E., Derbyshire, M.C., Mather, D.E., Kamphuis, L.G. (2022) "Identification of Sclerotinia stem rot resistance quantitative trait loci in a chickpea (Cicer arietinum) recombinant inbred line population" Functional Plant Biology. DOI: https://doi.org/10.1071/FP21216
Shi, G.S., Kariyawasam, G., Liu, S., Leng, Y., Zhong, S., Ali, S., Moolhuijzen, P., Moffat, C.S., Rasmussen, J.B., Friesen, T.L., Faris, J.D., Liu, Z. (2022) "A conserved hypothetical gene is required but not sufficient for Ptr ToxC production in Pyrenophora tritici-repentis" Molecular Plant-Microbe Interactions. DOI: doi.org/10.1094/MPMI-12-21-0299-R
Henares, B.M., Debler, J.W., Farfan-Caceres, L.M., Grime, C.R., Syme, R.A., Blake, S.N., Herdina., Davidson, J.A., Oliver, R.P., Singh, K.B., Kamphuis, L.G., Lee, R.C. (2022) "The novel avirulence effector AlAvr1 from Ascochyta lentis mediates host cultivar specificity of ascochyta blight in lentil" Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.13203
Severn-Ellis, A.A., Schoeman, M.H., Bayer, P.E., Hane, J.K., Rees, D.J.G., Edwards, D., Batley, J. (2022) "Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence" Frontiers in Plant Science. DOI: doi.org/10.3389/fpls.2022.811152
Pires, D. E. V., Stubbs, K. A., Mylne, J. S., & Ascher, D. B. (2022). "cropCSM: designing safe and potent herbicides with graph-based signatures" Briefings in Bioinformatics. DOI: https://doi.org/10.1093/bib/bbac042
Zhang, J., Islam, M. S., Zhao, Y., Anwar, M., Alhabbar, Z., She, M., Yang, R., Juhasz, A., Tang, Q., Chen, J., Liu, H., Jiang, Y., Zhai, S., Hu, X., Rong, J., Zhang, Y., Qing, Y., Liu, Q., Yu, Z., Zhang, Y., Balotf, S., Dowla, M., Afrin, S., Roy, N., Mallik, M. R., Saieed, M. A. U., Rahman, S., Sultana, N., Ahmed, S. A.-S., Florides, C., Chen, K., Sharma, D., Height, N., Biddulph, B., Lu, M., Mayer, J., & Ma, W. (2022). "Non-escaping frost tolerant QTL linked genetic loci at reproductive stage in six wheat DH populations." The Crop Journal. DOI: https://doi.org/10.1016/j.cj.2021.02.015
Sukhoverkov, K. V., Breese, K. J., Debowski, A. W., Murcha, M. W., Stubbs, K. A., & Mylne, J. S. (2022). "Inhibition of chloroplast translation as a new target for herbicides" RSC Chemical Biology. DOI: https://doi.org/10.1039/D1CB00192B
John, E., Jacques, S., Phan, H.T., Liu, L., Pereira, D., Croll, D., Singh, K.B., Oliver, R.P., Tan, K.C. (2022) "Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat" PLOS Pathogens. DOI: https://doi.org/10.1371/journal.ppat.1010149
Knight, N.L., Moslemi, A., Begum, F., Dodhia, K.N., Covarelli, L., Hills, A.L., Lopez-Ruiz, F.J. (2021) "Detection of Ramularia collo‐cygni from barley in Australia using triplex quantitative and droplet digital PCR" Pest Management Science. DOI: https://doi.org/10.1002/ps.6753
Harper, L.A., Paton, S., Hall, B., McKay S., Oliver, R.P., Lopez-Ruiz, F.J. (2021) "Fungicide resistance characterised across seven chemical classes in a Botrytis cinerea population isolated from Australian vineyards " Pest Management Science. DOI: https://doi.org/10.1002/ps.6749
Spencer, B., Mazanec, R., Gibberd, M., Zerihun, A. (2021) "Sapling and coppice biomass heritabilities and potential gains from Eucalyptus polybractea progeny trials" Tree Genetics & Genomes. DOI: https://doi.org/10.1007/s11295-021-01499-7
Taylor, C.M., Garg, G., Berger, J.D, Ribalta, F.M., Croser, J.S., Singh, K.B., Cowling, W.A., Kamphuis, L.G., Nelson, M.N. (2021) "A Trimethylguanosine Synthase1-like (TGS1) homologue is implicated in vernalisation and flowering time control" Theoretical and Applied Genetics DOI: https://doi.org/10.1007/s00122-021-03910-2
Taylor, C.M., van der Zanden, J., Saradadevi, R., Berger, J.D., Kamphuis, L.G., Pradhan, A., Sharma, D., Nelson, M.N., Cowling, W.A. (2021) "A multiplex PCR marker perfectly distinguishes between a series of four LanFTc1 alleles regulating flowering time in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Breeding. DOI: https://doi.org/10.1111/pbr.12982
Payne, C.D., Vadlamani, G., Hajiaghaalipour, F., Muhammad, T., Fisher, M.F., Andersson, H.S., Göransson, U., Clark, R.J., Bond, C.S., Mylne, J.S., Rosengren, K.J. (2021) "Solution NMR and racemic crystallography provide insights into a novel structural class of cyclic plant peptides" RSC Chemical Biology. DOI: https://doi.org/10.1039/D1CB00155H
Wallace, M.D., Debowski, A.W., Sukhoverkov, K.V., Mylne, J.S., Stubbs, K.A. (2021) "Herbicidal activity of fluoroquinolone derivatives" Plant Direct. DOI: https://doi.org/10.1002/pld3.348
Payne, C.D., Fisher, M.F., Mylne, J.S., Rosengren, K.J. (2021) "Structural characterization of the PawL-Derived Peptide family, an ancient subfamily of orbitides" Journal of Natural Products. DOI: DOI: 10.1021/acs.jnatprod.1c00672
Sukhoverkov, K.V., Breese, K.J., Debowski, A.W., Murcha, M.W., Stubbs, K.A., Mylne, J.S. (2021) "Inhibition of chloroplast translation as a new target for herbicides" RSC Chemical Biology. DOI: https://doi.org/10.1039/D1CB00192B
Derbyshire, M.C., Harper, L.A., Lopez-Ruiz, F.J. (2021) "Positive Selection of Transcription Factors Is a Prominent Feature of the Evolution of a Plant Pathogenic Genus Originating in the Miocene" Genome Biology and Evolution. DOI: https://doi.org/10.1093/gbe/evab167
Regmi, R., Newman, T.E., Kamphuis, L.G., Derbyshire, M.C. (2021) "Identification of Brassica napus small RNAs responsive to infection by a necrotrophic pathogen" BMC Plant Biology. DOI: https://doi.org/10.1186/s12870-021-03148-6
Mwape, V.W., Mobegi, F.M., Regmi, R., Newman, T.E., Kamphuis, L.G., Derbyshire, M.C. (2021) "Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines" BMC Genomics. DOI: https://doi.org/10.1186/s12864-021-07655-6
Bennett, S.J., Lamichhane, A.R., Thomson, L.L., Lui, K.Y., Michael, P.J. (2021) "Impact of Fungicide Application and Host Genotype on Susceptibility of Brassica napus to Sclerotinia Stem Rot across the South-Western Australian Grain Belt: A Genotype × Environment × Management Study" Agronomy. DOI: https://doi.org/10.3390/agronomy11061170
Moolhuijzen, P., See, P.T., Moffat, C.S. (2021) "The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing" BMC Research Notes. DOI: https://doi.org/10.1186/s13104-021-05751-0
See, P.T., Chen, K., Marathamuthu, K.A., Wood, B., Schultz, N., Shankar, M., Moffat, C.S. (2021) "Virulence assessment of Australian Pyrenophora tritici-repentis isolates" Plant Pathology DOI: https://doi.org/10.1111/ppa.13484
Andronis, C.E., Hane, J.K., Bringans, S., Hardy, G.E.S.J., Jacques, S., Lipscombe, R., Tan, K.C. (2021) "Gene Validation and Remodelling Using Proteogenomics of Phytophthora cinnamomi, the Causal Agent of Dieback" Frontiers in Microbiology. DOI: https://doi.org/10.3389/fmicb.2021.665396
Jones, D.A.B., Moolhuijzen, P.M., Hane, J.K. (2021) "Remote homology clustering identifies lowly conserved families of effector proteins in plant-pathogenic fungi" Mircobial Genomics. DOI: https://doi.org/10.1099/mgen.0.000637
Jones, D.A.B., Rozano, L., Debler, J.W. Mancera, R.L., Moolhuijzen, P.M., Hane, J.K. (2021) "An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens" Scientific Reports DOI: https://doi.org/10.1038/s41598-021-99363-0
Justesen, A.F., Corsi, B., Ficke, A., Hartl, L., Holdgate, S., Nistrup Jørgensen, L., Lillemo, M., Lin, M., Mackay, I.J., Mohler, V., Stadlmeier, M., Tan, K.C., Turner, J., Oliver, R.P., Cockram, J. (2021) "Hidden in plain sight: a molecular field survey of three wheat leaf blotch fungal diseases in North-Western Europe shows co-infection is widespread" European Journal of Plant Pathology. DOI: https://doi.org/10.1007/s10658-021-02298-5
Ge, C., Wentzel, E., D'Souza, N., Chen, K., Oliver, R.P., Ellwood, S.R. (2021) "Adult resistance genes to barley powdery mildew confer basal penetration resistance associated with broad-spectrum resistance" The Plant Genome. DOI: https://doi.org/10.1002/tpg2.20129
Bar, I., Thanjavur Sambasivam, P., Davidson, J., Farfan-Caceres, L.M., Lee, R.C., Hobson, K., Moore, K., Ford, R. (2021) "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia" Mircobial Genomics DOI: http://doi.org/10.1099/mgen.0.000627
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Moolhuijzen, P., Theen See, P., Oliver, R.P., Moffat, C.S. (2018) "Genomic distribution of a novel Pyrenophora tritici-repentis ToxA insertion element" PLOS One DOI: https://doi.org/10.1371/journal.pone.0206586
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Thatcher, L.F., Foley, R.C., Casarotto, H., Gao, L-L., Kamphuis L.G, Melser, S. and Singh K.B. (2018) "The Arabidopsis RNA Polymerase II Carboxyl Terminal Domain (CTD) Phosphatase-Like1 (CPL1) is a biotic stress susceptibility gene" Nature, Scientific Reports. 8: 13454 DOI: https://www.nature.com/articles/s41598-018-31837-0
Syme, R.A., Tan, K., Ryback, K., Friesen, T.L., McDonald, B.A., Oliver, R.P., Hane, J.K. (2018) "Pan-Parastagonospora Comparative Genome Analysis – effector prediction and genome evolution." Genome Biology and Evolution DOI: https://doi.org/10.1093/gbe/evy192
Talbot, J.J., Subedi, S., Halliday, C.L., Hibbs, D.E., Lai, F., Lopez-Ruiz, F.J., Harper, L., Park, R.F., W.S., Biswas, C., Cooley, L., Carter, D., Sorrell, T.C., Barrs, V.R., Chen, S.C-A. (2018) "Surveillance for azole resistance in clinical and environmental isolates of Aspergillus fumigatus in Australia and cyp51A homology modelling of azole-resistant isolates" Journal of Antimicrobial Chemotherapy DOI: https://pubmed.ncbi.nlm.nih.gov/29846581/
Denton-Giles, M., Derbyshire, M., Khentry, Y., Buchwaldt, L., Kamphuis, L.G. (2018) "Partial stem resistance in Brassica napus to highly aggressive and genetically diverse Sclerotinia sclerotiorum isolates from Australia" Canadian Journal of Plant Pathology Vol 40, 20`18 Issue 4 DOI: https://www.tandfonline.com/doi/full/10.1080/07060661.2018.1516699
Abdullah, A.S., Turo, C., Moffat C.S., Lopez-Ruiz, F.J., Gibberd, M.R., Hamblin, J., Zerihun, A., (2018) "Real-Time PCR for Diagnosing and Quantifying Co-infection by Two Globally Distributed Fungal Pathogens of Wheat." Frontiers in Plant Science DOI: https://doi.org/10.3389/fpls.2018.01086
Ellwood, S.R., Piscetek, V., Mair, W.J., Lawrence, J.A., Lopez-Ruiz, F.J., Rawlinson, C. (2018) "Genetic variation of Pyrenophora teres f. teres isolates in Western Australia and emergence of a Cyp51A fungicide resistance mutation." Plant Pathology. Doi: 10.1111/ppa.12924 DOI: https://bsppjournals.onlinelibrary.wiley.com/doi/full/10.1111/ppa.12924
Downie, R.C., Bouvet, L., Furuki, E., Gosman, N., Gardner, K.A., Mackay, I.J., Mantello, C.C., Mellers, G., Phan, H.T.T., Rose, G.A., Tan, K-C., Oliver, R.P., Cockram, J. (2018) "Assessing European wheat sensitivities to Parastagonospora nodorum necrotrophic effectors and fine-mapping the Snn3-B1 locus conferring sensitivity to the effector SnTox3." Frontiers in Plant Science DOI: https://pubmed.ncbi.nlm.nih.gov/30022985/
Bertazzoni, S., Williams, A.H., Jones, D.A., Syme, R.A., Tan, K.C., Hane, J.K. (2018) "Accessories make the outfit: Accessory Chromosomes and other dispensable DNA regions in plant-pathogenic Fungi." Molecular Plant-Microbe Interactions DOI: https://pubmed.ncbi.nlm.nih.gov/29664319/
Mousavi-Derazmahalleh, M., Bayer, P.E., Hane, J.K., Babu, V., Nguyen, H.T., Nelson, M.N., Erskine, W., Varshney, R.K., Papa, R., Edwards, D (2018) "Adapting legume crops to climate change using genomic approaches" Plant, Cell & Environment DOI: https://pubmed.ncbi.nlm.nih.gov/29603775/
Elderfield, J.A., Lopez-Ruiz, F.J., Van den Bosch, F., Cunniffe, N.J. (2018) "Using epidemiological principles to explain fungicide resistance management tactics: why do mixtures outperform alternations?" Phytopathology DOI: https://apsjournals.apsnet.org/doi/10.1094/PHYTO-08-17-0277-R
Anderson, J. P., Kidd, B and Singh, K. B. (2018) "Transcriptome analysis reveals class IX ethylene response factors show specific up-regulation in resistant but not susceptible Medicago truncatula lines following infection with Rhizoctonia solani." European Journal of Plant Pathology. 152: 549-554 DOI: https://doi.org/10.1007/s10658-018-1492-x
Syme, R.A., Martin, A., Wyatt, N.A., Lawrence, J.A., Muria-Gonzalez, M.J., Friesen, T.L., Ellwood, S.R. (2018) "Transposable element genomic fissuring in Pyrenophora teres is associated with genome expansion and dynamics of host-pathogen genetic interactions" Frontiers in Genetics. Volume 9, Issue APR, 18 April 2018, Article number 130 DOI: https://www.frontiersin.org/articles/10.3389/fgene.2018.00130/full
Zulak, K.G., Cox, B.A., Tucker, M.A., Oliver, R.P., Lopez-Ruiz, F.J. (2018) "Improved Detection and Monitoring of Fungicide Resistance in Blumeria graminis f.sp. hordei with high-throughput genotype quantification by Digital PCR." Frontiers in Microbiology DOI: https://dx.doi.org/10.3389%2Ffmicb.2018.00706
Lane, D.W., Kamphuis, L.G., Derbyshire, M.C., Denton-Giles, M. (2018) "Heat-dried sclerotia of Sclerotinia sclerotiorum myceliogenically germinate in water and are able to infect Brassica napus" Crop & Pasture Science DOI: https://doi.org/10.1071/CP18109
Frick, K.M., Foley, R.C., Kamphuis, L.G., Siddique, K.H.M., Garg, G., Singh, K.B (2018) "Characterisation of the genetic factors affecting quinolizidine alkaloid biosynthesis and its response to abiotic stress in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Cell and Environment. doi.org/10.1111/pce.13172 DOI: https://onlinelibrary.wiley.com/doi/full/10.1111/pce.13172
Jones, D.A.B., Bertazzoni, S., Turo, C.J., Syme, R. A., Hane, J.K. (2018) "Bioinformatic prediction of plant–pathogenicity effector proteins of fungi" Current Opinion in Microbiology. doi/org/10.1016/j.mb.2018.01.017 DOI: https://pubmed.ncbi.nlm.nih.gov/29462764/
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See, P.T., Marathamuthu, K.A., Iagallo, E.M., Oliver, R.P., and Moffat, C.S. (2018) "Evaluating the importance of the tan spot ToxA-Tsn1 interaction in Australian wheat varieties" Plant Pathology DOI: doi.org/10.1111/ppa.12835
Mousavi-Derazmahalleh, M., Bayer, P.E., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L.G., Singh, K.B., Berger, J.D., Hane, J.K., Edwards, D., Erskine, W., Nelson, M.N (2018) "Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: Narrow-leafed lupin" Theoretical & Applied Genetics DOI: https://doi.org/10.1007/s00122-017-3045-7
Mousavi-Derazmahalleh, M., Bayer, P., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L.G., Singh, K.B., Hane, J., Edwards, D., Erskine, W. and Nelson, M.N. (2018) "Migration and adaptation of wild narrow-leafed lupin" Theoretical and Applied Genetics DOI: https://link.springer.com/article/10.1007/s00122-017-3045-7
Sperschneider, J., Dodds, P.N., Gardiner, D.M., Singh, K.B., Taylor, J.M. (2018) "Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0" British Society for Plant Pathology. DOI: https://doi.org/10.1111/mpp.12682
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Dinglasan, E.G., Godwin, I.D., Phan, H.T.T., Tan, K.C., Platz, G.J., Hickey, L.T. (2018) "Vavilov wheat accessions provide useful sources of resistance to tan spot (syn. yellow spot) of wheat." Plant Pathology. DOI: https://doi.org/10.1111/ppa.12822
Barrero, R.A., Guerrero, F.D., Black, M., McCooke, J., Chapman, B., Schilkey, F., Pérez de León, A.A., Miller, R.J., Bruns, S., Dobry, J., Mikhaylenko, G., Stormo, K., Bell, C., Tao, Q., Bogden, R., Moolhuijzen, P.M., Hunter, A., Bellgard, M.I. (2017) "Gene-enriched draft genome of the cattle tick Rhipicephalus microplus: assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome" International Journal of Parasitology DOI: https://doi.org/10.1016/j.ijpara.2017.03.007
Casey, T.M., Khan, J.M., Bringans, S.D., Koudelka, T., Takle, P.S., Downs, R.A., Livk, A., Syme, R.A., Tan, K-C., Lipscombe, R.J. (2017) "Analysis of reproducibility of proteome coverage and quantitation using isobaric mass tags." Journal of Proteome Research. DOI: https://doi.org/10.1021/acs.jproteome.5b01154
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Derbyshire, M., Denton-Giles, M., Hegedus, D., Seifbarghy, S., Rollins, J., van Kan, J., Seidl, M.F., Faino, L., Mbengue, M., Navaud, O., Raffaele, S., Hammond-Kosack, K., Heard, S., Oliver, R.P. (2017) "The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens." Genome Biology and Evolution. DOI: https://doi.org/10.1093/gbe/evx030
Poudel, B., Ellwood, S.R., Testa, A.C., McLean, M., Sutherland, M.W., Martin, A. (2017) "Rare pyrenophora teres hybridization events revealed by development of sequence-specific PCR markers." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-11-16-0396-R
Rybak, K., See, P.T., Phan, H.T.T., Syme, R.A., Moffat, C.S., Oliver, R.P., Tan, K-C. (2017) "A functionally conserved Zn2 Cys6 binuclear cluster transcription factor class regulates necrotrophic effector gene expression and host-specific virulence of two major Pleosporales fungal pathogens of wheat." Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.12511
van den Bosch, F., Lopez-Ruiz, F.J., Oliver, R.P., Paveley, N., Helps, J., van den Berg, F. (2017) "Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops." Plant Pathology. DOI: https://doi.org/10.1111/ppa.12787
Jørgensen, L.N., van den Bosch, F., Oliver, R.P., Heick, T.M., Paveley, N.D. (2017) "Targeting fungicide inputs according to need." Annual Review of Phytopathology. DOI: https://doi.org/10.1146/annurev-phyto-080516-035357
Idnurm, A., Urquhart, A.S., Vummadi, D.R., Chang, S., Van de Wouw, A.P., Lopez-Ruiz, F.J. (2017) "Spontaneous and CRISPR/Cas9-induced mutation of the osmosensor histidine kinase of the canola pathogen Leptosphaeria maculans." Fungal Biology and Biotechnology. DOI: https://doi.org/10.1186/s40694-017-0043-0
Van de Wouw, A.P., Elliott, V.L., Chang, S., López-Ruiz, F.J., Marcroft, S.J., Idnurm, A. (2017) "Identification of isolates of the plant pathogen Leptosphaeria maculans with resistance to the triazole fungicide fluquinconazole using a novel In Planta assay." PLOS ONE. DOI: https://doi.org/10.1371/journal.pone.0188106
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Clarkson, J.P., Warmington, R.J., Walley, P.G., Denton-Giles, M., Barbetti M.J., Brodal, G., Nordskog, B. (2017) "Population structure of Sclerotinia subarctica and Sclerotinia sclerotiorum in England, Scotland and Norway." Frontiers in Microbiology. DOI: https://doi.org/10.3389/fmicb.2017.00490
Abdullah, A.S., Moffat, C.S., Lopez-Ruiz, F.J., Gibberd, M.R., Hamblin, J., Zerihun, A. (2017) "Host–Multi-Pathogen Warfare: Pathogen Interactions in Co-infected Plants." Frontiers in Plant Science. DOI: https://doi.org/10.3389/fpls.2017.01806
Badet, T., Peyraud, R., Mbengue, M., Navaud, O., Derbyshire, M., Oliver, R.P., Barbacci, A., Raffaele, S. (2017) "Codon optimization underpins generalist parasitism in fungi." eLife. DOI: https://doi.org/10.7554/eLife.22472.001
Mair, W., Lopez-Ruiz, F., Stammler, G., Clark, W., Burnett, F., Holloman, D., Ishii, H., Thind, T.S., Brown, J.K.M., Fraaije, B., Cools, H., Shaw, M., Fillinger, S., Walker, A-S., Mellado, E., Schnabel, G., Mehl, A., Oliver, R.P. (2016) "Proposal for a unified nomenclature for target-site mutations associated with resistance to fungicides" Pest Management Science DOI: doi.org/10.1002/ps.4301
Oliver. R.P., Tan, K.C., Moffat, C.S. (2016) "Necrotrophic Pathogens of Wheat" Encyclopedia of Food Grains (Second Edition) DOI: doi.org/10.1016/B978-0-12-394437-5.00240-0
Anderson, J.P., Hane, J.K., Stoll, T., Pain, N., Hastie, M.L., Parwinder, K., Hoogland, C., Gorman, J.J., Singh, K.B. (2016) "Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth" Data in Brief DOI: doi.org/10.1016/j.dib.2016.05.042
Ge, X., Deng, W., Lee, Z.Z., Lopez-Ruiz, F.J., Schweizer, P., Ellwood, S.R. (2016) "Tempered mlo broad-spectrum resistance to barley powdery mildew in an Ethiopian landrace" Scientific Reports DOI: 10.1038/srep29558
Lu, X., Kracher, B., Saur, I.M.L., Bauer, S., Ellwood, S.R., Wise, R., Yaeno, T., Maekawa, T., Schulze-Lefert, P. (2016) "Allelic barley MLA immune receptors recognize sequence-unrelated avirulence effectors of the powdery mildew pathogen" PNAS DOI: doi.org/10.1073/pnas.1612947113
Anderson, J.P., Hane, J.K., Stoll, T., Pain, N., Hastie, M.L., Kaur, P., Hoogland, C., Gorman, J.J., Singh, K.B. (2016) "Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts" Molecular & Cellular Proteomics DOI: 10.1074/mcp.M115.054502
Testa, A.C., Oliver, R.P., Hane, J.K. (2016) "OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes" Genome Biology and Evolution DOI: doi.org/10.1093/gbe/evw121
See, P.T., Moffat, C.S., Morina, J. Oliver, R.P. (2016) "Evaluation of a Multilocus Indel DNA Region for the Detection of the Wheat Tan Spot Pathogen Pyrenophora tritici-repentis" Plant Disease DOI: doi.org/10.1094/PDIS-03-16-0262-RE
Gao, Y., Liu, Z., Faris, J.D., Richards, J., Brueggeman, R.S., Li, X., Oliver, R.P., McDonald, B.A., Friesen, T.L. (2016) "Validation of Genome-Wide Association Studies as a Tool to Identify Virulence Factors in Parastagonospora nodorum" Phytopathology DOI: doi.org/10.1094/PHYTO-02-16-0113-FI
John, E., Lopez-Ruiz, F., Rybak, K., Mousley, C.J., Oliver, R.P., Tan, K.C. (2016) "Dissecting the role of histidine kinase and HOG1 mitogen-activated protein kinase signalling in stress tolerance and pathogenicity of Parastagonospora nodorum on wheat" Microbiology DOI: doi.org/10.1099/mic.0.000280
Hane, J.K., Ming, Y., Kamphuis, L.G., Nelson, M.N., Garg, G., Atkins, C.A., Bayer, P.E., Bravo, A., Bringans, S., Cannon, S., Edwards, D., Foley, R., Gao, L., Harrison, M.J., Huang, W., Hurgobin, B., Li, S., Liu, C., McGrath, A., Morahan, G., Murray, J., Weller, J., Jian, J., Singh, K.B. (2016) "A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution" Plant Biotechnology Journal DOI: doi.org/10.1111/pbi.12615
Derbyshire, M.C., Denton-Giles, M. (2016) "The control of sclerotinia stem rot on oilseed rape (Brassica napus): current practices and future opportunities" Plant Pathology DOI: doi.org/10.1111/ppa.12517
Phan, H.T.T., Rybak, K., Furuki, E., Breen, S., Solomon, P.S., Oliver, R.P., Tan, K.C. (2016) "Differential effector gene expression underpins epistasis in aplant fungal disease" The Plant Journal DOI: doi.org/10.1111/tpj.13203
De Wit, P.J.G.M., Testa, A.C., Oliver, R.P. (2016) "Fungal Plant Pathogenesis Mediated by Effectors" Microbiology Spectrum DOI: doi.org/10.1128/microbiolspec.FUNK-0021-2016
Williams. A.H., Sharma, M., Thatcher, L.F., Azam, S., Hane, J.K., Sperschneider, J., Kidd, B.N., Anderson, J.P., Ghosh, R., Lichtenzveig, J., Corby Kistler, H., Shea, T., Young, S., Buck, S.A., Kamphuis, L.G., Saxena, R., Pande, S., Ma, L., Varshney, R.K., Singh, K.B (2016) "Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors" BMC Genomics DOI: 10.1186/s12864-016-2486-8
Syme, R.A., Tan, K.C., Hane, J.K., Dodhia, K., Stoll, T., Hastie, M., Furuki, E., Ellwood, S.R., Williams, A.H., Tan, Y., Testa, A.C., Gorman, J.J., Oliver, R.P. (2016) "Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics" PLoS ONE DOI: doi.org/10.1371/journal.pone.0147221
Foley, R.C., Kidd, B.N., Hane, J.K., Anderson, J.P., Singh, K.B. (2016) "Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat" PLoS ONE DOI: doi.org/10.1371/journal.pone.0152548
McDonald, M.C., McGinness, L., Hane J.K., Williams, A.H., Milgate, A., Solomon, P.S (2016) "Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici" G3 Genes | Genomes | Genetics DOI: doi.org/10.1534/g3.115.025197
Mair, W.J., Deng, W., Mullins, J.G.L., West, S., Wang, P., Besharat, N., Ellwood, S.R., Oliver, R.P., Lopez-Ruiz, F.J. (2016) "Demethylase Inhibitor Fungicide Resistance in Pyrenophora teres f. sp. teres Associated with Target Site Modification and Inducible Overexpression of Cyp51" Frontiers in Microbiology DOI: doi.org/10.3389/fmicb.2016.01279
Oliver, R.P (2016) "Fungicide resistance management in practice; mixtures, alternations and cross resistance patterns" Journal of Plant Pathology DOI: 10.4454/jpp.v98i4sup.3775
Tucker, M.A., Lopez-Ruiz, F., Jayasena, K.W., Oliver, R.P. (2015) "Origin of Fungicide-Resistant Barley Powdery Mildew in Western Australia: Lessons to Be Learned" Fungicide Resistance in Plant Pathogens “Principles and a Guide to Practical Management” DOI: 10.1007/978-4-431-55642-8
van den Bosch, F., Fraaije, B., Oliver, R.P., van den Berg, F., Paveley, N. (2015) "The Use of Mathematical Models to Guide Fungicide Resistance Management Decisions" Fungicide Resistance in Plant Pathogens DOI: 10.1007/978-4-431-55642-8_4
van den Bosch, F., Paveley, N., Fraaije, B., van den Berg, F., Oliver, R. (2015) "Evidence based resistance management" Fungicide Resistance in Plant Pathogens Principles and a Guide to Practical Management DOI: 10.1007/978-4-431-55642-8_5
Testa, A., Oliver, R.P., Hane, J.K (2015) "Overview of genomic and bioinformatic resources for Zymoseptoria tritici" Fungal Genetics and Biology DOI: doi.org/10.1016/j.fgb.2015.04.011
McDonald, M.C., Williams, A.H., Milgate, A., Pattemore, J.A., Solomon, P.S., Hane, J.K. (2015) "Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici" Fungal Genetics and Biology DOI: doi.org/10.1016/j.fgb.2015.04.012
Gao, Y., Faris, J.D., Liu, Z., Kim, Y.M., Syme, R.A., Oliver, R.P., Xu, S.S., Friesen, T.L. (2015) "Identification and Characterization of the SnTox6-Snn6 Interaction in the Parastagonospora nodorum–Wheat Pathosystem" APS Publications DOI: doi.org/10.1094/MPMI-12-14-0396-R
Chooi, Y.H., Krill, C., Barrow, R.A., Chen, S., Trengove, R., Oliver, R.P., Solomon, P.S. (2015) "An In Planta-Expressed Polyketide Synthase Produces (R)-Mellein in the Wheat Pathogen Parastagonospora nodorum" Applied and Environmental Microbiology Journal DOI: doi.org/10.1128/AEM.02745-14
Testa, A.C., Hane, J.K., Ellwood, S.R., Oliver, R.P. (2015) "CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts" BMC Genomics DOI: doi.org/10.1186/s12864-015-1344-4
Foley, R.C., Jimenez-Lopez, J.C., Kamphuis, L.G., Hane, J.K., Melser, S., Singh, K.B. (2015) "Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches" BMC Plant Biology DOI: doi.org/10.1186/s12870-015-0485-6
Thatcher, L.F., Kamphuis, L.G., Hane, J.K., Oñate-Sánchez, L., Singh, K.B. (2015) "The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress" PLOS ONE DOI: doi.org/10.1371/journal.pone.0126978
Cockram, J., Scuderi, A., Barber, T., Furuki, E., Gardner, K.A., Gosman, N., Kowalczyk, R., Phan, H.T., Rose, G.A., Tan, K.C., Oliver, R.P., Mackay, I.J. (2015) "Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population" G3 - Genes Genomes Genetics DOI: 10.1534/g3.115.021584
Tan, K.C., Phan, H.T.T., Rybak, K., John, E., Chooi, Y.H., Solomon, P.S., Oliver, R.P. (2015) "Functional redundancy of necrotrophic effectors – consequences for exploitation for breeding" Frontiers in Plant Science DOI: doi.org/10.3389/fpls.2015.00501
Oliver, R.P. (2014) "A reassessment of the risk of rust fungi developing resistance to fungicides" Pest Management Science DOI: 10.1002/ps.3767
Tan, K.C., Oliver, R.P (2014) "12 Metabolomics and Proteomics to Dissect Fungal Phytopathogenicity" Fungal Genomics DOI: 10.1007/978-3-642-45218-5_12
Moffat, C.S., See, P.T., Oliver, R.P. (2014) "Leaf yellowing of the wheat cultivar Mace in the absence of yellowspot disease" Australasian Plant Pathology DOI: 10.1007/s13313-014-0335-2
Vela-Corcia, D., Bellón-Gómez, D., Lopez-Ruiz, F., Tores, J.A., Perez-Garcia, A. (2014) "The Podosphaera fusca TUB2 gene, a molecular “Swiss Army knife” with multiple applications in powdery mildew research" Fungal Biology DOI: doi.org/10.1016/j.funbio.2013.12.001
Tan, K.C., Waters, O.D.C., Rybak, K., Antoni, E., Furuki, E. Oliver, R.P. (2014) "Sensitivity to three Parastagonospora nodorum necrotrophic effectors in current Australian wheat cultivars and the presence of further fungal effectors" Crop and Pasture Science DOI: doi.org/10.1071/CP13443
Oliver, R.P., Hewitt, H.G. (2014) "Fungicides in crop protection" CAB eBooks DOI: 10.1079/9781780641669.0000
Vleeshouwers, V.G.A.A., Oliver, R.P (2014) "Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens" Molecular Plant-Microbe Interactions DOI: 10.1094/MPMI-10-13-0313-IA
Moffat, C.S., See, P.T., Oliver, R.P. (2014) "Generation of a ToxA knockout strain of the wheat tan spot pathogen Pyrenophora tritici-repentis" Molecular Plant Pathology DOI: doi.org/10.1111/mpp.12154
Oliver, R., Lichtenzveig, J., Tan, K.C., Waters, O., Rybak, K., Lawrence, J., Friesen, T., Burges, P. (2014) "Absence of detectable yield penalty associated with insensitivity to Pleosporales necrotrophic effectors in wheat grown in the West Australian wheat belt" Plant Pathology DOI: doi.org/10.1111/ppa.12191
Tucker, M.A., Moffat, C.S., Ellwood, S.R., Tan, K.C., Jayasena, K, Oliver, R.P. (2014) "Development of genetic SSR markers in Blumeria graminis f. sp. hordei and application to isolates from Australia" Plant Pathology DOI: doi.org/10.1111/ppa.12258
Pattemore, J.A., Hane, J.K., Williams, A.H., Wilson, B.A.L., Stodart, B.J., Ash, G.J. (2014) "The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species" BMC Genomics DOI: 10.1186/1471-2164-15-660
Cowley, R., Luckett, D.J., Ash, G.J., Harper, J.D.I., Vipin, C.A., Raman, H., Ellwood, S.R. (2014) "Identification of QTLs associated with resistance to Phomopsis pod blight (Diaporthe toxica) in Lupinus albus" Breeding Science DOI: 10.1270/jsbbs.64.83
Hane, J.K., Anderson, J.P., Williams, A.H., Sperschneider, J., Singh, K.B. (2014) "Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8" PLOS Genetics DOI: doi.org/10.1371/journal.pgen.1004281
Kamphuis, L.G., Hane, J.K., Nelson, M.N., Gao, L., Atkins, C.A., Singh, K.B. (2014) "Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers" Plant Biotechnology Journal DOI: doi.org/10.1111/pbi.12229