Lars Kamphuis

Newman T. E., Jacques S., Grime C., Mobegi F. M., Kamphuis F. L., Khentry Y., Lee R. C. and Kamphuis L. G. (2023) "Genetic dissection of domestication traits in interspecific chickpea populations" The Plant Genome. DOI: https://doi.org/10.1002/tpg2.20408

Regmi, R., Newman, T.E., Khentry, Y., Kamphuis, L.G., Derbyshire, M.C. (2023). "Genome-wide identification of Sclerotinia sclerotiorum small RNAs and their endogenous targets" BMC Genomics. DOI: https://doi.org/10.1186/s12864-023-09686-7

Talapov T, Gunes N, Bagriyanik Z, Demirel O, Dedecan O, Uygun AE, Akvec O, Kahraman A, Kamphuis LG and Can C. (2023) "First report of Ascochyta rabiei infections on endemic Turkish populations of Cicer bijugum and C. turcicum" Plant Disease. DOI: https://doi.org/10.1094/PDIS-02-23-0393-PDN

Newman, T. E., Kim, H., Khentry Y., Sohn, K. H., Derbyshire M. and Kamphuis L. G. (2023) "The broad host range pathogen Sclerotinia sclerotiorum produces multiple effector proteins that induce host cell death intracellularly." Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.13333

Henares, B. M., Blake, S. N., Farfan-Caceres, L., Tahghighi, H., Debler, J. W., Russ, M. H., Farquharson, E. A., Rose, J. A., Khani, M., Davidson, J., Kamphuis, L. G., & Lee, R. C. (2023). "Virulence profiles and genome-wide association study for Ascochyta lentis isolates collected from Australian lentil-growing regions." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-10-22-0397-R

Newman, T. E., Khentry Y., Leo A., Lindbeck K., Kamphuis L. G., and Derbyshire M. (2023) "Association mapping combined with whole genome sequencing data reveals candidate causal variants for sclerotinia stem rot resistance in Brassica napus." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-06-22-0217-FI

Lee, R. C., Grime, C. R., O'Driscoll, K., Khentry, Y., Farfan-Caceres, L. M., Tahghighi, H., & Kamphuis, L. G. (2023). "Field Pea (Pisum sativum) Germplasm Screening for Seedling Ascochyta Blight Resistance and Genome-Wide Association Studies Reveal Loci Associated with Resistance to Peyronellaea pinodes and Ascochyta koolunga." Phytopathology. DOI: https://doi.org/10.1094/PHYTO-02-22-0051-R

Garg G., Kamphuis L.G., Bayer P.E., Kaur P., Dudchenko O., Taylor C.M., Frick K.M., Foley R.C., Gao L-L., Erez Lieberman A., Edwards D. and Singh K.B. (2022) "A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits" The Plant Journal. DOI: https://doi.org/10.1111/tpj.15885

Mwape, V., Khoo, K.H.P., Chen, K., Khentry, Y., Newman, T.E., Derbyshire, M.C., Mather, D.E., Kamphuis, L.G. (2022) "Identification of Sclerotinia stem rot resistance quantitative trait loci in a chickpea (Cicer arietinum) recombinant inbred line population" Functional Plant Biology. DOI: https://doi.org/10.1071/FP21216

Henares, B.M., Debler, J.W., Farfan-Caceres, L.M., Grime, C.R., Syme, R.A., Blake, S.N., Herdina., Davidson, J.A., Oliver, R.P., Singh, K.B., Kamphuis, L.G., Lee, R.C. (2022) "The novel avirulence effector AlAvr1 from Ascochyta lentis mediates host cultivar specificity of ascochyta blight in lentil" Molecular Plant Pathology. DOI: https://doi.org/10.1111/mpp.13203

Mwape, V., Khentry, Y., Newman, T., Denton-Giles, M., Derbyshire, M., Chen, K., Berger, J., Kamphuis, L. (2021). "Identification of sources of Sclerotinia sclerotiorum resistance in a collection of wild Cicer germplasm." Plant Disease. DOI: https://doi.org/10.1094/PDIS-02-21-0367-RE

Derbyshire, M., Khentry, Y., Severn-Ellis, A., Mwape, V., Mohd Saad, NS., Newman, T., Taiwo, A., Regmi, R., Buchwaldt, L., Denton-Giles, M., Batley, J., Kamphius, L. (2021) "Modeling first order additive × additive epistasis improves accuracy of genomic prediction for sclerotinia stem rot resistance in canola." The Plant Genome. DOI: https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20088

Kamphuis, L.G., Garg, G. Foley, R., Singh, K.B. (2021) "Genomic resources for lupins are coming of age" Legume Science DOI: https://doi.org/10.1002/leg3.77

Taylor, C.M., Garg, G., Berger, J.D, Ribalta, F.M., Croser, J.S., Singh, K.B., Cowling, W.A., Kamphuis, L.G., Nelson, M.N. (2021) "A Trimethylguanosine Synthase1-like (TGS1) homologue is implicated in vernalisation and flowering time control" Theoretical and Applied Genetics DOI: https://doi.org/10.1007/s00122-021-03910-2

Mwape, V.W., Mobegi, F.M., Regmi, R., Newman, T.E., Kamphuis, L.G., Derbyshire, M.C. (2021) "Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines" BMC Genomics. DOI: https://doi.org/10.1186/s12864-021-07655-6

Regmi, R., Newman, T.E., Kamphuis, L.G., Derbyshire, M.C. (2021) "Identification of Brassica napus small RNAs responsive to infection by a necrotrophic pathogen" BMC Plant Biology. DOI: https://doi.org/10.1186/s12870-021-03148-6

Taylor, C.M., van der Zanden, J., Saradadevi, R., Berger, J.D., Kamphuis, L.G., Pradhan, A., Sharma, D., Nelson, M.N., Cowling, W.A. (2021) "A multiplex PCR marker perfectly distinguishes between a series of four LanFTc1 alleles regulating flowering time in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Breeding. DOI: https://doi.org/10.1111/pbr.12982

Newman, T.E, Jacques, S., Grime, C., Kamphuis, F.L., Lee, R.C., Berger, J., Kamphuis, L.G. (2021) "Identification of novel sources of resistance to ascochyta blight in a collection of wild Cicer accessions." Phytopathology DOI: doi.org/10.1094/PHYTO-04-20-0137-R

Taylor, C.M., Kamphuis, L.G., Cowling, W.A., Nelson, M.N., Berger, J.D. (2020) "Ecophysiology and phenology: Genetic resources for genetic/genomic improvement of narrow-leafed lupin." The Lupin Genome, pp 19-30 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_2

Graham-Taylor, C., Kamphuis, L.G., Derbyshire, M.C. (2020) "A detailed in silico analysis of secondary metabolite biosynthesis clusters in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum." BMC Genomics DOI: https://doi.org/10.1186/s12864-019-6424-4

Kamphuis, L.G., Foley, R.C., Frick, K.M., Garg, G., Singh, K.B. (2020) "Transcriptome resources paving the way for lupin crop improvement." The Lupin Genome, pp 53-71 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_5

Singh, K.B., Foley, R.C., Garg, G., Kamphuis, L.G. (2020) "Overview of genomic resources available for lupins with a focus on narrow-leafed lupin (Lupinus angustifolius)." The Lupin Genome, pp 31-43 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_3

Taylor, C.M., Kamphuis, L.G., Cowling, W.A., Berger, J., Nelson, M.N. (2020) "Genomic applications and resources to dissect flowering time control in narrow-leafed lupin." The Lupin Genome, pp109-137 (eds Singh, K.B., Nelson, M.N. and Kamphuis, L.G.). ISBN 978-3-030-21270-4 Springer Nature, Cham, Switzerland. DOI: https://link.springer.com/chapter/10.1007/978-3-030-21270-4_9

De Boer, K., Melser, S., Kamphuis, L.G., Garg, G., Frick, K. and Singh, K.B. (2019) "Identification and profiling of narrow-leafed lupin (L. angustifolius) microRNAs during seed development" BMC Genomics DOI: https://doi.org/10.1186/s12864-019-5521-8

Derbyshire, M.C., Denton-Giles, M., Hane, J.K., Chang, S., Mousavi-Derazmmahelleh, M., Raffaele, S., Buchwaldt, L., Kamphuis, L.G. (2019) "A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum" PLOS One DOI: https://doi.org/10.1371/journal.pone.0214201

Lane, D., Denton-Giles, M., Derbyshire, M., and Kamphuis, L.G. (2019) "Abiotic conditions governing the myceliogenic germination of Sclerotinia sclerotiorum allowing the basal infection of Brassica napus" Australasian Plant Pathology DOI: https://doi.org/10.1007/s13313-019-0613-0

Allan, J., Regm"i, R., Denton-Giles, M., Kamphuis, L.G., Derbyshire, M.C. (2019). "The host generalist phytopathogenic fungus Sclerotinia sclerotiorum deferentially expresses multiple metabolic enzymes on two different plant hosts." Scientific Reports, nature.com. DOI: https://doi.org/10.1038/s41598-019-56396-w

Taylor, C., Kamphuis, L.G., Zhang, W., Garg, G., Bayer, P., Berger, J.D., Edwards, D., Singh, K.B., Cowling, W.A., and Nelson, M.N. (2019) "NDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalisation response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Cell and Environment, 42,174–187. DOI: https://pubmed.ncbi.nlm.nih.gov/29677403/

Denton-Giles, M., Derbyshire, M., Khentry, Y., Buchwaldt, L., Kamphuis, L.G. (2018) "Partial stem resistance in Brassica napus to highly aggressive and genetically diverse Sclerotinia sclerotiorum isolates from Australia" Canadian Journal of Plant Pathology Vol 40, 20`18 Issue 4 DOI: https://www.tandfonline.com/doi/full/10.1080/07060661.2018.1516699

Frick, K.M., Foley, R.C., Kamphuis, L.G., Siddique, K.H.M., Garg, G., Singh, K.B (2018) "Characterisation of the genetic factors affecting quinolizidine alkaloid biosynthesis and its response to abiotic stress in narrow-leafed lupin (Lupinus angustifolius L.)" Plant Cell and Environment. doi.org/10.1111/pce.13172 DOI: https://onlinelibrary.wiley.com/doi/full/10.1111/pce.13172

Lane, D.W., Kamphuis, L.G., Derbyshire, M.C., Denton-Giles, M. (2018) "Heat-dried sclerotia of Sclerotinia sclerotiorum myceliogenically germinate in water and are able to infect Brassica napus" Crop & Pasture Science DOI: https://doi.org/10.1071/CP18109

Mousavi-Derazmahalleh, M., Bayer, P., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L.G., Singh, K.B., Hane, J., Edwards, D., Erskine, W. and Nelson, M.N. (2018) "Migration and adaptation of wild narrow-leafed lupin" Theoretical and Applied Genetics DOI: https://link.springer.com/article/10.1007/s00122-017-3045-7

Mousavi-Derazmahalleh, M., Bayer, P.E., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L.G., Singh, K.B., Berger, J.D., Hane, J.K., Edwards, D., Erskine, W., Nelson, M.N (2018) "Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: Narrow-leafed lupin" Theoretical & Applied Genetics DOI: https://doi.org/10.1007/s00122-017-3045-7

Taylor, C. M., Kamphuis, L. G., Zhang W., Garg, G., Berger, J. D., Mousavi-Derazmahalleh, M., bayer, P., Edwards, D., Singh, K. B., Cowling W. A and Nelson, M. (2018) "INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalisation response and flowering time in narrow-leafed lupin (Lupinus angustifolius) " Plant Cell and Environment. 41: DOI: https://pubmed.ncbi.nlm.nih.gov/29677403/

Thatcher, L.F., Foley, R.C., Casarotto, H., Gao, L-L., Kamphuis L.G, Melser, S. and Singh K.B. (2018) "The Arabidopsis RNA Polymerase II Carboxyl Terminal Domain (CTD) Phosphatase-Like1 (CPL1) is a biotic stress susceptibility gene" Nature, Scientific Reports. 8: 13454 DOI: https://www.nature.com/articles/s41598-018-31837-0

Hane, J.K., Ming, Y., Kamphuis, L.G., Nelson, M.N., Garg, G., Atkins, C.A., Bayer, P.E., Bravo, A., Bringans, S., Cannon, S., Edwards, D., Foley, R., Gao, L., Harrison, M.J., Huang, W., Hurgobin, B., Li, S., Liu, C., McGrath, A., Morahan, G., Murray, J., Weller, J., Jian, J., Singh, K.B. (2016) "A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution" Plant Biotechnology Journal DOI: doi.org/10.1111/pbi.12615

Williams. A.H., Sharma, M., Thatcher, L.F., Azam, S., Hane, J.K., Sperschneider, J., Kidd, B.N., Anderson, J.P., Ghosh, R., Lichtenzveig, J., Corby Kistler, H., Shea, T., Young, S., Buck, S.A., Kamphuis, L.G., Saxena, R., Pande, S., Ma, L., Varshney, R.K., Singh, K.B (2016) "Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors" BMC Genomics DOI: 10.1186/s12864-016-2486-8

Foley, R.C., Jimenez-Lopez, J.C., Kamphuis, L.G., Hane, J.K., Melser, S., Singh, K.B. (2015) "Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches" BMC Plant Biology DOI: doi.org/10.1186/s12870-015-0485-6

Thatcher, L.F., Kamphuis, L.G., Hane, J.K., Oñate-Sánchez, L., Singh, K.B. (2015) "The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress" PLOS ONE DOI: doi.org/10.1371/journal.pone.0126978

Kamphuis, L.G., Hane, J.K., Nelson, M.N., Gao, L., Atkins, C.A., Singh, K.B. (2014) "Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers" Plant Biotechnology Journal DOI: doi.org/10.1111/pbi.12229